Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0308
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6VZH0 Cluster: Pseudouridine synthase; n=26; Bacteria|...    34   4.4  
UniRef50_Q3LW79 Cluster: Second-largest subunit of RNA polymeras...    34   4.4  
UniRef50_Q23D68 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  

>UniRef50_A6VZH0 Cluster: Pseudouridine synthase; n=26;
           Bacteria|Rep: Pseudouridine synthase - Marinomonas sp.
           MWYL1
          Length = 355

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 348 LINHVLGSKSHNFTTEYLST-NKPYNDDVICGIAGRAVIL 232
           L+N VL +  +N   EYL T NKP  DD I G+AG   IL
Sbjct: 122 LVNKVLRA-GNNHEKEYLVTVNKPITDDFIAGLAGGVPIL 160


>UniRef50_Q3LW79 Cluster: Second-largest subunit of RNA polymerase
           III; n=1; Bigelowiella natans|Rep: Second-largest
           subunit of RNA polymerase III - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 1074

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
 Frame = +1

Query: 247 SGYPTNDVIVVRFVRTQVLSSKVMRLRTENMINQTNRYL-LSVRDCYRTWNLFCN-WLAL 420
           SG  TN  +VV  V    + +K   L T +M+N+ N Y+  S++  Y   +LF N W  +
Sbjct: 407 SGIFTNKNLVVSIVCNSQVHTKFSYLSTTSMLNKINSYVNKSIKSLYPR-SLFLNYWNRV 465

Query: 421 CAIIS------GIVLNCKYITQ 468
           C I S      G++ N  Y +Q
Sbjct: 466 CFIESPEGESCGLIKNLSYYSQ 487


>UniRef50_Q23D68 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 788

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +3

Query: 81  TNNTIDTDYTSRVHCQLINRSTNVKLMLKYRIDKITQGGHEF 206
           TNNT +++  S+  C L N S ++   +KY+++ +T+G HEF
Sbjct: 166 TNNTTNSN-KSKEECCLFNESKSLST-IKYKLNDVTEGIHEF 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,244,687
Number of Sequences: 1657284
Number of extensions: 12259579
Number of successful extensions: 27614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27608
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)