Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0308
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1535 + 27531468-27531892,27531988-27532407,27533183-275333...    30   2.3  
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505...    29   5.3  

>07_03_1535 +
           27531468-27531892,27531988-27532407,27533183-27533341,
           27533461-27533782
          Length = 441

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 541 EVGKKKTKSFSTSAHHGRVIFILPSWVHRLICP 639
           +VGKK   + S  A + R +  L SWVHR + P
Sbjct: 287 QVGKKLILNMSIEAAYQRAMNTLTSWVHREVNP 319


>07_01_0675 +
           5055842-5055950,5056036-5056193,5056276-5057067,
           5057544-5057760,5058280-5058449,5058986-5059630
          Length = 696

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 555 KNKEFFDFGSSRPGDIYLAELGTSSY 632
           KN     F S +P D+Y A++G SSY
Sbjct: 460 KNPWRCSFDSGKPSDLYCADVGQSSY 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,120,145
Number of Sequences: 37544
Number of extensions: 305851
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)