Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0308
         (755 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069423-1|AAL39568.1|  217|Drosophila melanogaster LD13607p pro...    31   1.7  
AE014298-818|AAN09155.2|  510|Drosophila melanogaster CG12236-PB...    31   1.7  

>AY069423-1|AAL39568.1|  217|Drosophila melanogaster LD13607p
           protein.
          Length = 217

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +3

Query: 48  TYVGTQKRPFGTNNTIDTDYTSRVHCQLINRSTNVKLMLKYRIDKITQGGHEFCNQS--N 221
           T V +  +  GTN++ +  +T    C+++  + N+   ++ +         + CN++  N
Sbjct: 136 TQVKSDSKASGTNDSPNNKWTECQFCKMVITTVNLWRHIRTQHTPQPPRKCDMCNKNFKN 195

Query: 222 NYSLKLLHVRLSHK 263
            YSL+  H+R+SH+
Sbjct: 196 KYSLR-EHIRISHE 208


>AE014298-818|AAN09155.2|  510|Drosophila melanogaster CG12236-PB,
           isoform B protein.
          Length = 510

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +3

Query: 48  TYVGTQKRPFGTNNTIDTDYTSRVHCQLINRSTNVKLMLKYRIDKITQGGHEFCNQS--N 221
           T V +  +  GTN++ +  +T    C+++  + N+   ++ +         + CN++  N
Sbjct: 429 TQVKSDSKASGTNDSPNNKWTECQFCKMVITTVNLWRHIRTQHTPQPPRKCDMCNKNFKN 488

Query: 222 NYSLKLLHVRLSHK 263
            YSL+  H+R+SH+
Sbjct: 489 KYSLR-EHIRISHE 501


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,208,911
Number of Sequences: 53049
Number of extensions: 573783
Number of successful extensions: 1171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)