Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0306
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    25   0.61 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.61 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.61 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.61 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.5  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 524 RKNR*LDLRDPNGLRRRVLAF*MRNATS 441
           RKNR L  R+P  L RR++ F +R+A S
Sbjct: 84  RKNRVLQWREPEEL-RRLMDFGVRSAPS 110


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 294 TRPSGRWCEVPSAGLC 341
           ++ S + CE+PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 294 TRPSGRWCEVPSAGLC 341
           ++ S + CE+PSAGLC
Sbjct: 45  SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 294 TRPSGRWCEVPSAGLC 341
           ++ S + CE+PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 435 DFTSRVSHSKRENATSKPIWIAEIELSV 518
           +FT+ V +  RE + ++PI   EIE  V
Sbjct: 171 EFTTHVMNLLREQSRTRPITPKEIERMV 198


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 479 VEAHLDRGDRAIGFF 523
           VEAHL +G  AIG +
Sbjct: 189 VEAHLRKGRGAIGAY 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,251
Number of Sequences: 336
Number of extensions: 2456
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)