Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0306
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0183 - 21681673-21682524                                         31   0.65 
10_08_0996 - 22112020-22112859                                         28   4.6  
06_02_0263 - 13566621-13569875                                         28   4.6  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   8.0  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    27   8.0  

>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 67  SQAFIATLLFDPSMSALPIIAKKIRQALDCSPIKRERELGLDRRETG 207
           SQAF A LL D + +A+P++  + R A + +  + E E    RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274


>10_08_0996 - 22112020-22112859
          Length = 279

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 67  SQAFIATLLFDPSMSALPIIAKKIRQALDCSPIKRERELGLDRRETG 207
           +QAF A LL D + +A P++  + R A + +  + E E    RR TG
Sbjct: 225 AQAFSAVLLADANRTASPVVVVQKRAAPE-TETETEEEPPRQRRRTG 270


>06_02_0263 - 13566621-13569875
          Length = 1084

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 476 DVEAHLDRGDRAIGFFLTRASRLRSPDITQFD 571
           ++EAHL  GDR +  F+    R  SP +  FD
Sbjct: 33  ELEAHLGVGDRVLAEFIVDLGR-ASPSVADFD 63


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 375 RLGWLRP*RRSGIIP 331
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 6   YQEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 113
           Y+ F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,912
Number of Sequences: 37544
Number of extensions: 310627
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)