Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0306
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81080-1|CAB03086.2|   93|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81080-1|CAB03086.2|   93|Caenorhabditis elegans Hypothetical
           protein F39H2.1 protein.
          Length = 93

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 558 ISGLRSRDARVKKKPIARSPRSKW 487
           ++GL   DAR+ ++ + RSP +KW
Sbjct: 29  LAGLEQNDARLMEQQVKRSPSAKW 52


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 477  TSKPIWIAEIELSVFS*HVHHGSEVRI 557
            TSK + + E  +SV+S   HHG  +R+
Sbjct: 3913 TSKSVDVEETPISVYSNVYHHGESIRV 3939


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 477  TSKPIWIAEIELSVFS*HVHHGSEVRI 557
            TSK + + E  +SV+S   HHG  +R+
Sbjct: 3902 TSKSVDVEETPISVYSNVYHHGESIRV 3928


>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 477  TSKPIWIAEIELSVFS*HVHHGSEVRI 557
            TSK + + E  +SV+S   HHG  +R+
Sbjct: 3902 TSKSVDVEETPISVYSNVYHHGESIRV 3928


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 477  TSKPIWIAEIELSVFS*HVHHGSEVRI 557
            TSK + + E  +SV+S   HHG  +R+
Sbjct: 3913 TSKSVDVEETPISVYSNVYHHGESIRV 3939


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 477  TSKPIWIAEIELSVFS*HVHHGSEVRI 557
            TSK + + E  +SV+S   HHG  +R+
Sbjct: 3902 TSKSVDVEETPISVYSNVYHHGESIRV 3928


>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 477  TSKPIWIAEIELSVFS*HVHHGSEVRI 557
            TSK + + E  +SV+S   HHG  +R+
Sbjct: 3902 TSKSVDVEETPISVYSNVYHHGESIRV 3928


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 297 RPSGRWCEVPSAGLCLNASKAEAS 368
           RPSG WC     GL L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,533,841
Number of Sequences: 27780
Number of extensions: 241575
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)