Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0306
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58730.1 68418.m07357 pfkB-type carbohydrate kinase family pr...    29   2.2  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    27   8.9  

>At5g58730.1 68418.m07357 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 353

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 423 SKQCDFTSRVSHSKRENATSKPIWIAEIELSVF 521
           S  CD  S+V H  R   T  PI   E E +VF
Sbjct: 60  SVSCDLVSKVGHDFRYEVTHSPIVAPEKETTVF 92


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 113 ADIEGSKSNVAMNAWLPQ 60
           AD+ GS  NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,990,812
Number of Sequences: 28952
Number of extensions: 233142
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)