Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0302
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    28   1.00 
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    27   3.0  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   5.3  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   9.3  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   9.3  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 637 GAICLVNSGNERDFSLLNRRRYLGVRGLVSRNSLTT 530
           G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 56  GEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 631 ICLVNSGNERDFSLLNRRRYL 569
           +CL N    +D+ LLNR RY+
Sbjct: 227 LCLWNHAYYKDYGLLNRSRYI 247


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 124 YGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 252
           YG     +T+S  SS+V  P  P    P  +    + N+S+ S
Sbjct: 321 YGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSS 363


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 312 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 413
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 254 GRAVCTKGRDVINASL*LALTRNSSFMGDNCKPQSPARRSFSGLPGPL 397
           GR + T  RD  N S      R+SS M  +  P +PA +  S +P PL
Sbjct: 143 GRDIGTSSRDSANVS------RSSSMMSSHPIP-TPAIQRTSSIPNPL 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,434
Number of Sequences: 5004
Number of extensions: 47551
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)