Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0302
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106...    29   3.1  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   4.1  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    28   5.5  
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600...    28   5.5  
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254...    28   7.2  
07_03_0401 + 17724103-17724463,17724554-17724683,17725068-177250...    28   7.2  
07_03_0152 + 14479796-14480074,14480179-14480244,14480381-14480485     28   7.2  

>10_01_0085 +
           1061962-1062141,1062283-1062431,1062734-1062819,
           1062986-1063113,1063213-1063341,1063428-1063495,
           1063575-1063812
          Length = 325

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -2

Query: 438 TSATLKESACSPWPRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFV 268
           TS    E      P   G PL+LL  GDWG +    N+  +     K+A  T + FV
Sbjct: 18  TSPATAELTRHEHPVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFV 73


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 324  PRLWGIIANPNPQHEGVSAGCPGL*ARENML 416
            P LW +++ P P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 391 PGQPAETPSCWGLGFAIIPHKRGIPSKR 308
           PG+P +TP  W +  + +P +  +P+KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470


>01_06_0090 +
           26358051-26359157,26359582-26359701,26359968-26360099,
           26360194-26360375,26360488-26360602,26362001-26362135,
           26362261-26362395
          Length = 641

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 350 PQSPARRSFSGLPGPLGQGEHADSF--SVALVRPRTS 454
           P++P R S SG P P G    A SF  S+ +  PR+S
Sbjct: 20  PETPGRGSSSGSPAPGGSASKAVSFARSLGVHFPRSS 56


>09_06_0111 -
           20924838-20924969,20925147-20925290,20925391-20925453,
           20925993-20926116,20926779-20927005,20927088-20927255,
           20927348-20927498,20927567-20927889
          Length = 443

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 166 SLVNFPTTPTAVKPPRVGPKTSLNHSIGSRTGGVY 270
           + +  PTT  A     VG KT +NH +G    G +
Sbjct: 203 NFIQIPTTLMAQVDSSVGGKTGINHPLGKNLIGAF 237


>07_03_0401 +
           17724103-17724463,17724554-17724683,17725068-17725083,
           17725130-17725203,17725693-17725761,17726224-17726257
          Length = 227

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 142 TFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGSRTGGVYKGQGRNQRELMTRAY 315
           T  SS    + +  T PT  +PPR G +     +   R G V KG    + +LM  +Y
Sbjct: 49  TLVSSSLIEIESTHTPPTTGRPPRTGEQD--GEAAVLRQGWVKKGPWTPEEDLMLASY 104


>07_03_0152 + 14479796-14480074,14480179-14480244,14480381-14480485
          Length = 149

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 190 PTAVKPPRVGPKTSLNHSIGSRTGGVYKGQG 282
           P A KPP +GPK      I  R    Y G G
Sbjct: 78  PAAAKPPPIGPKRGTKVKILRRESYWYNGTG 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,259
Number of Sequences: 37544
Number of extensions: 352697
Number of successful extensions: 771
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)