Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0302
         (643 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   2.0  
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       25   2.0  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   8.2  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 335 GDNCKPQSPARRSFSGLPGPLG 400
           G  C P+  A +   GLPGP+G
Sbjct: 91  GGCCLPKCFAEKGNRGLPGPMG 112



 Score = 23.4 bits (48), Expect = 6.2
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 272 KGRDVINASL*LALTRNSSFMGDNCKPQSPARRSFSGLPGPLGQ 403
           KG +V  A+     T      GD  +P  P R    G  G  GQ
Sbjct: 287 KGEEVYGATGTTTTTGPKGEKGDRGEPGEPGRSGEKGQAGDRGQ 330


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 166 SLVNFPTTPTAVKPPRVGPKTS 231
           SLVN  T  T   PP V P TS
Sbjct: 397 SLVNGGTPSTTTMPPSVAPTTS 418


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 357 DWGLQLSPINEEFLVSASHK 298
           D GL+++P   EF++ +SH+
Sbjct: 670 DNGLKIAPTKTEFIMVSSHQ 689


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,677
Number of Sequences: 2352
Number of extensions: 12146
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)