Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0302
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical...    28   4.9  
AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical...    28   4.9  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   6.5  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +1

Query: 112 PQVPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGSRTGGVYKGQGRNQ 291
           P+      VT  TS K     +   TP + KPPR  P+T L+    S      +      
Sbjct: 107 PEPADDEFVTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTSCLSRKMEENFSRM 166

Query: 292 RELM 303
           +ELM
Sbjct: 167 QELM 170


>Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +1

Query: 112 PQVPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGSRTGGVYKGQGRNQ 291
           P+      VT  TS K     +   TP + KPPR  P+T L+    S      +      
Sbjct: 105 PEPADDEFVTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTSCLSRKMEENFSRM 164

Query: 292 RELM 303
           +ELM
Sbjct: 165 QELM 168


>AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +1

Query: 112 PQVPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGSRTGGVYKGQGRNQ 291
           P+      VT  TS K     +   TP + KPPR  P+T L+    S      +      
Sbjct: 107 PEPADDEFVTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTSCLSRKMEENFSRM 166

Query: 292 RELM 303
           +ELM
Sbjct: 167 QELM 170


>AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +1

Query: 112 PQVPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGSRTGGVYKGQGRNQ 291
           P+      VT  TS K     +   TP + KPPR  P+T L+    S      +      
Sbjct: 105 PEPADDEFVTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTSCLSRKMEENFSRM 164

Query: 292 RELM 303
           +ELM
Sbjct: 165 QELM 168


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = +2

Query: 338 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 433
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 312 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 413
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,777,936
Number of Sequences: 27780
Number of extensions: 282044
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)