Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0302
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    31   0.65 
At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim...    28   4.6  
At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative sim...    28   4.6  
At5g51300.2 68418.m06360 splicing factor-related contains simila...    27   8.0  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    27   8.0  

>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 338 DNCKPQSPARRSFSGLPGPLGQGEHADSFSVALVRPRTSKGIT 466
           D+C   SP+RR   G+  PL  G  +DS      + R   G T
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457


>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 442

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 166 SLVNFPTTPTAVKPPRVGPKTSLNHSIGSRTGGVY 270
           + +  PTT  A     VG KT +NH +G    G +
Sbjct: 202 NFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 236


>At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 338

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 166 SLVNFPTTPTAVKPPRVGPKTSLNHSIGSRTGGVY 270
           + +  PTT  A     VG KT +NH +G    G +
Sbjct: 98  NFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 132


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 97  HLMILPQVPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNH 240
           H   +  +P+ N  +  T      LVN P  P    PP VG   S+ +
Sbjct: 725 HSQNMGNMPWANNPSVSTPDHSQGLVNAPWAPNPPMPPTVGYSQSMGN 772


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 97  HLMILPQVPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNH 240
           H   +  +P+ N  +  T      LVN P  P    PP VG   S+ +
Sbjct: 725 HSQNMGNMPWANNPSVSTPDHSQGLVNAPWAPNPPMPPTVGYSQSMGN 772


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,699
Number of Sequences: 28952
Number of extensions: 264728
Number of successful extensions: 570
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)