Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0301
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.68 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.68 
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   3.6  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.3  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 208 SGCGRCRVWSMFVRYVVLAS*YFNIMRPQKLYIF 309
           +GCG+  VW  +VR+V     Y        LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 391 ARKIRGRPENAGPDPVRNVRRFSRV 317
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +2

Query: 467 NWHGQGESDCLIKTSIAMA---LAGVDA 541
           N HG   +DC+I +S A A   +AG+DA
Sbjct: 341 NTHGSKHTDCIITSSEAAANRFMAGIDA 368


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 245 TNIDQTRHRPHPLPVQTRHAPV 180
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 133 FPYLHYSID*RLFTLETCCGYGYEPARHL 47
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 637 GYLKRVIVTPAVYPRLLEFLHVDIQST 557
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,842
Number of Sequences: 5004
Number of extensions: 61567
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)