Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0301
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0423 + 18944555-18945226,18945309-18945545 32 0.53
05_06_0098 + 25560158-25560925 32 0.53
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.93
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.2
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.8
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.0
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 5.0
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 28 6.6
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.7
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 8.7
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 482 GESDCLIKTSIAMALAGVDAM*FLPSALNVNVKKFKQA 595
GE CL+ TS+ A+A DAM AL+ +V +FK +
Sbjct: 258 GEGRCLVPTSLVRAIADDDAMATSNPALSRDVNRFKDS 295
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 224 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 45
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 245 TNIDQTRH------RPHPLPVQTRHAPVLRANP 165
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 655 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 554
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 215 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 126
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 209 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 96
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 221 RPHPLPVQTRHAPVLRANPYSEVTDP 144
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>11_06_0667 + 26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/90 (23%), Positives = 41/90 (45%)
Frame = +2
Query: 272 ILI*CGLKNCIYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAV 451
I + C C+ + +++RTR L+P++D+ + VV + + C
Sbjct: 847 IAVSCDEAECVDICVRGTLGYLDPEFVRTRTLKPASDVYNFGVVMLEVLSGRRAIC---- 902
Query: 452 QRSAQNWHGQGESDCLIKTSIAMALAGVDA 541
R ++ HG G+ D + + + AL +DA
Sbjct: 903 -RWKED-HGDGDGDSPMDSLVNHALPLIDA 930
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 247 ARTSTRPGTGRIRFPSKPDTPRSSE 173
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 235 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 149
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,998,811
Number of Sequences: 37544
Number of extensions: 460667
Number of successful extensions: 1332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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