Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0301
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.4  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    30   1.8  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    30   1.8  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    30   1.8  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.4  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    29   3.1  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   4.1  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   4.1  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   5.5  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   7.2  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   7.2  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 353 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 469
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 263 AKTT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 144
           AKTT  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 152 AKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 263 AKTT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 144
           AKTT  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 152 AKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 336 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 470
           T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 229 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 134
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +3

Query: 288 ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLR 467
           ASK + I Y  RENR+ ++ G+     GL R +  V+ C +  + D      P F   LR
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF---LR 206

Query: 468 TGTD--KGNPTV*LKQALRW 521
                   NP + L QA RW
Sbjct: 207 RSIPFLMHNPNIALVQA-RW 225


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 619 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 509
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 619 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 509
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 360 RVRIQSET*DDFRECHIKYIQFLRPH 283
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 238 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 119
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 238 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 119
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,932
Number of Sequences: 28952
Number of extensions: 341312
Number of successful extensions: 897
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)