Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0300
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.3  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    30   1.7  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.3  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   3.0  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   3.0  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    27   9.1  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    27   9.1  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 314 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 430
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 297 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 431
           T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 190 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 95
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -3

Query: 256 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 80
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -3

Query: 256 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 80
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 651 WNLVNPFMRVT-N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRN 508
           W + +  +RV+   +  HLAT+  + L  P  +A  N F   FRA+ RN
Sbjct: 157 WYISSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRN 205


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 651 WNLVNPFMRVT-N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRN 508
           W + +  +RV+   +  HLAT+  + L  P  +A  N F   FRA+ RN
Sbjct: 157 WYISSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRN 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,227
Number of Sequences: 28952
Number of extensions: 335180
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)