Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0299
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   6e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   8e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   5e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              29   5.2  
SB_40326| Best HMM Match : PhoU (HMM E-Value=2.9)                      28   6.8  
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = -1

Query: 162 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           SWI  RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -1

Query: 147 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -1

Query: 147 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -1

Query: 147 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -1

Query: 147 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = -1

Query: 144 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -1

Query: 144 RTSAKAFAKGVFINQERKLEVRRRLDT 64
           RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2   RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = -1

Query: 147 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           R+T+  ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 169 VKFLDRRKTNISESICQRCFHQSRTKV 89
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = -1

Query: 147 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           R+T+  ++  + VFINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 169 VKFLDRRKTNISESICQRCFHQSRTKV 89
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -1

Query: 147 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 166 KFLDRRKTNISESICQRCFHQSRTKV 89
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -1

Query: 147 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -3

Query: 169 VKFLDRRKTNISESICQRCFHQSRTKV 89
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -1

Query: 147 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 43
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -3

Query: 169 VKFLDRRKTNISESICQRCFHQSRTKV 89
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 276 RNIQAAFLARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYA 431
           +N +   LAR+  + +F   ++  AHLDT RR P    D+     R     RYA
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626


>SB_40326| Best HMM Match : PhoU (HMM E-Value=2.9)
          Length = 672

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 111 KHLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRHI-----LLFHA 275
           KH   + SL F LR    +T +  + +  +I  +  L  L  N IEP+H+      L   
Sbjct: 363 KHNKSLRSLNFSLRE---WTVDCVMAIADMISTSTLLKELTINDIEPQHVDVIANALIDN 419

Query: 276 RNIQAAFLARFEHSNLFKV 332
            +I+   LARF  ++L K+
Sbjct: 420 VSIKTLTLARFPGNSLVKI 438


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 230 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 120
           Q  EV  +++  GH Y C   GE++ S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,872,686
Number of Sequences: 59808
Number of extensions: 433515
Number of successful extensions: 1083
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)