Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0299
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF078157-10|AAG24074.1|  377|Caenorhabditis elegans Hypothetical...    28   6.0  

>Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical
           protein ZC443.4 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 132 SLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRHILLFHARNIQAAFLARFE 311
           SL  V +R  N    +A+  P    +  +   +K  K  P + LLF    +Q A  A F 
Sbjct: 25  SLQNVSKRWHNVYDALAVGSPQ--QVQEFYKYIKVYKQCPANDLLFMNMTVQLARAAMFP 82

Query: 312 HSNLFK--VKLSAHLD 353
            +++FK  +K   H+D
Sbjct: 83  TNSMFKQMLKFEKHMD 98


>AF078157-10|AAG24074.1|  377|Caenorhabditis elegans Hypothetical
           protein F25E5.3 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 159 KNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRHILLFH 272
           K      +I  P    +N Y G+L +  I PRHILLF+
Sbjct: 49  KTLDGERSIESPWAGSVNIY-GILSSTVISPRHILLFN 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,235
Number of Sequences: 27780
Number of extensions: 326467
Number of successful extensions: 723
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)