Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0299
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    30   1.8  
At4g10890.1 68417.m01772 expressed protein                             29   4.2  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    28   5.6  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    28   7.4  

>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 150 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRHILLFHARNIQAAFLARFEHSNLFK 329
           RRS + + N+    PP+ PI+H    L   KI+PR +     + ++ + ++      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 330 VKLSAHL 350
               AHL
Sbjct: 112 KAAEAHL 118


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 151 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 35
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 246 EPRHILLFHARNIQAAFLARFEHSNLFKVKLSAHLDTHR 362
           EP  +LL   R     F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 114 HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRHI 260
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E  ++
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLESSYM 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,031,357
Number of Sequences: 28952
Number of extensions: 295599
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)