Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0297
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   4.8  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   8.4  

>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 127  LSRSKYGIYVLSRCLGYKLILYKFIYKTEFLFKHLYLI 240
            L  ++ G YVL RC+ + L+L     K   L K+++ I
Sbjct: 950  LPYTQEGNYVLVRCIAFNLMLQAGALKYTPLIKYIFYI 987


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 187 VLVYNPNSATVHIFRIYFDLRINHVIIYSF 98
           VLV N +   + +FR   +L ++ V IYS+
Sbjct: 36  VLVANRSEIAIRVFRTAHELSMHTVAIYSY 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,337
Number of Sequences: 5004
Number of extensions: 50065
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)