Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0291
(306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 33 0.007
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 27 0.62
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 1.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 1.9
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 1.9
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 2.5
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 2.5
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 3.3
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 3.3
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 24 4.4
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 24 4.4
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 24 4.4
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 24 4.4
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 23 7.7
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 23 7.7
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.7
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 23 7.7
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 23 7.7
>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
Q0130|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 74
Score = 33.5 bits (73), Expect = 0.007
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -1
Query: 306 LGFALSEAMGLFCLMMA 256
LGFAL+EA GLFCLM+A
Sbjct: 51 LGFALTEATGLFCLMLA 67
Score = 26.6 bits (56), Expect = 0.82
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 195 FGSLIIGYARNPSLKQQLFS 254
F +LI G +RNPS++ LFS
Sbjct: 28 FSNLISGTSRNPSVRPHLFS 47
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 27.1 bits (57), Expect = 0.62
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 283 YGSVLSYDGVENNCCLREGF 224
YGSVL Y+ NN L GF
Sbjct: 725 YGSVLDYEATRNNILLHFGF 744
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 1.1
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 169 VPELVLEQSSAPSSSAMPGTPPSSSSCSQRHHKTEQTHS 285
VP V SS+ S + P T SSS Q H T T S
Sbjct: 3681 VPSTVSPHSSSISDTKSPATVTISSSSGQFTHSTFSTGS 3719
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 1.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 196 SAPSSSAMPGTPPSS 240
SAPSSS P +PP+S
Sbjct: 3 SAPSSSTTPASPPTS 17
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 16 HLQQYPPIHRWYLLSLHSSLQC 81
HL Y P WYL SLH C
Sbjct: 63 HLTIYEPQLTWYLSSLHRITGC 84
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 30 PTHTQMVPAVPTQLSAVRS 86
P HT VPAVP+Q+ + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 2.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 152 DSGSSWFRSWYW 187
D G SWFR+ YW
Sbjct: 421 DCGMSWFRNEYW 432
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 2.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 193 SSAPSSSAMPGTPPSSSSCSQRHHK 267
S PS P PPSS SQRHH+
Sbjct: 137 SLPPSRHQSP--PPSSVLASQRHHR 159
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 3.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 169 VPELVLEQSSAPSSSAMPGTPPSSS 243
VP ++ + P SS P T PSS+
Sbjct: 1494 VPSMIPSVAQQPPSSVAPATAPSST 1518
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 3.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 172 PELVLEQSSAPSSSAMPGTPPSSSSCSQRHHKTEQT 279
P+L E S +P T S SSC H T
Sbjct: 301 PQLTPEMFDVKQGSPIPPTAYSGSSCETSQHTIANT 336
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 4.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 173 RSWYWNSLRLPHHRL 217
+ WY+NS RL HRL
Sbjct: 79 QDWYYNSTRLLVHRL 93
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 178 LVLEQSSAPSSSAMPGTPPSSSS 246
LVL S++PSS+++ G+ S SS
Sbjct: 483 LVLTASASPSSTSVDGSSSSDSS 505
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 24.2 bits (50), Expect = 4.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 283 YGSVLSYDGVENN 245
YGSV+S DGVE N
Sbjct: 38 YGSVISVDGVEFN 50
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.2 bits (50), Expect = 4.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 184 LEQSSAPSSSAMPGTPPSSSSCSQRHHKTEQTHSLR 291
L S AP++S + PP SSS +H++R
Sbjct: 8 LRNSRAPTASQLLNPPPPSSSTRSGRLFAPLSHTMR 43
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 193 SSAPSSSAMPGTPPSSSSCSQRHHKTEQTHSLRQGETQ 306
SS+ SSS+ + SSS + E+T ++G ++
Sbjct: 166 SSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSE 203
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 23.4 bits (48), Expect = 7.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -2
Query: 50 YHLCMGGYCCKWSH 9
Y + GY C WSH
Sbjct: 133 YEISQSGYYCIWSH 146
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 181 VLEQSSAPSSSAMPGTPPSSSSCSQRHHKTEQT 279
+ +SA S+S+ TP SSS+ S + T
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSST 165
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 181 VLEQSSAPSSSAMPGTPPSSSSCSQRH 261
+ + +A SSS TPP+S S RH
Sbjct: 147 IKQPKNANSSSTCTRTPPTSGRFSIRH 173
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 181 VLEQSSAPSSSAMPGTPPSSSSCS 252
++ +++ SSSA P T SSSS S
Sbjct: 128 LVSSTTSSSSSATPSTTSSSSSSS 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,352
Number of Sequences: 5004
Number of extensions: 24512
Number of successful extensions: 114
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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