Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0289
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   4.0  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   4.0  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    26   4.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   5.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   6.9  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   9.1  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
 Frame = -1

Query: 260 SESEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 123
           +E+ ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 148 NEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 364 NCRPTSTLTEEHRDRILILN--RRFLERRLTDDMLRKRVSITADAGTDSAGTNATTSFLT 537
           N  PT    + HRD   + N  +       T D+LRK ++ T  +GT +  +N  +S ++
Sbjct: 551 NHSPTLHSKDLHRDMATVNNYAKSPPSFHATQDLLRKTLAYTNSSGTSTVLSN-DSSAIS 609

Query: 538 ATIL 549
           +T L
Sbjct: 610 STFL 613


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +1

Query: 178 CDDPRISPLTSQYECPQLSLLIITSDSENQQNRTEIIFYYSMHEIFKQH 324
           C D ++  + + + CP ++ +I    SE   N     F++ +    K+H
Sbjct: 248 CID-QVEQILTNHHCPVVACIIEPIQSEGGDNHASPDFFHKLQATLKKH 295


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 230 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 123
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 263 FSESEVMINRDNWGHSYCDVRGEI 192
           F E+E +++   +  SYC VRG I
Sbjct: 267 FVETETILDSSKYCVSYCQVRGSI 290


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 284 ISVLFCWFSESEVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 123
           I  L C F  +E ++NR  W      V G  +G + +     ++ ++   IKNE
Sbjct: 92  IKSLQCLFCNNEGLLNRQEWFEHSFHVHGLNIGLADN---IVYINRLLEKIKNE 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,923
Number of Sequences: 5004
Number of extensions: 47953
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)