Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0289
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0005 - 16886553-16886946,16887079-16887404                       31   1.0  
07_03_0794 + 21562995-21563004,21564151-21565799                       29   4.1  

>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +3

Query: 453 RYAPQTCQYHRGCGHRQRGHKCNYELFNRNNFSIRYWSWNYRGC 584
           R A     Y   C     G +C      R+N S RYW W   GC
Sbjct: 64  RDAAAVTAYREDCPFLDPGFQCISN--GRSNSSFRYWRWQPHGC 105


>07_03_0794 + 21562995-21563004,21564151-21565799
          Length = 552

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 184 DPRISPLTSQYECPQLSLLIITSDSEN 264
           D   +PL+SQ+EC  LS L  T D+++
Sbjct: 23  DSPYTPLSSQFECDNLSALTNTPDNQS 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,888,090
Number of Sequences: 37544
Number of extensions: 314040
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)