Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0289
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 29 4.2
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 4.2
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 28 5.5
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9) 28 7.3
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06) 27 9.7
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 27 9.7
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.7
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = -3
Query: 192 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -3
Query: 177 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -3
Query: 177 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -3
Query: 177 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -3
Query: 177 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -3
Query: 174 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3
Query: 174 RTSAKAFAKGVFINQERKLEVRRRLDT 94
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = -3
Query: 177 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 199 VKFLDRRKTNISESICQRCFHQSRTKV 119
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = -3
Query: 177 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 199 VKFLDRRKTNISESICQRCFHQSRTKV 119
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 177 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 196 KFLDRRKTNISESICQRCFHQSRTKV 119
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 177 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 199 VKFLDRRKTNISESICQRCFHQSRTKV 119
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 177 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 73
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 199 VKFLDRRKTNISESICQRCFHQSRTKV 119
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = -1
Query: 629 LNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAF 513
++++ R +WRASL AY K+VAVKKLVV F
Sbjct: 56 MHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 94
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = -1
Query: 614 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAF 513
R +WRASL AY K+VAVKKLVV F
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 47
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 306 RNIQAAFLARFEHSNLFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYA 461
+N + LAR+ + +F ++ AHLDT RR P D+ R RYA
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 516 CNYELFNRNNFSIRYWSWNYRGCWH 590
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 215 TNAPSYPY*SLPRI---LKTNKIE-PRSYSIIPCTKYSSSIF 328
T+ PSYPY LPRI L ++ P SY P ++S+F
Sbjct: 145 TSPPSYPYKPLPRIPTSLSLKSLQAPPSYYYKPLPHITTSLF 186
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 11 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 100
W+PG CPP C+ +L + TV + +S
Sbjct: 80 WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -1
Query: 602 RASLXXXXXXXXXXXAYTKIVAVKKLVVAF 513
RASL AY K+VAVKKLVV F
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGF 34
>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
Length = 334
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 218 NAPSYPY*SLPRILKTNKIEPRSYSIIPCTKYSSSI 325
++PSYPY LPRI + + SY P + +S+
Sbjct: 69 SSPSYPYKPLPRIPTSPSLVYHSYPYKPLPRIPTSL 104
>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 471 CQYHRGC--GHRQRGHKCNYELFNRNNFSIRYWSWNYRGCWHQTCPPIVP 614
C Y GC G+ Q+ HKCN ++ Y GC Q C P+VP
Sbjct: 327 CYYCTGCQKGYDQKNHKCN---------NLCY------GCGEQECSPLVP 361
>SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06)
Length = 230
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 218 NAPSYPY*SLPRILKTNKIEPRSYSIIPCTKY 313
++PSYPY LPR K+N E S++ ++Y
Sbjct: 92 SSPSYPYKPLPR--KSNNFEKIGSSVVIVSEY 121
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 471 CQYHRGC--GHRQRGHKCNYELFNRNNFSIRYWSWNYRGCWHQTCPPIVP 614
C Y GC G+ Q+ HKCN ++ Y GC Q C P+VP
Sbjct: 395 CYYCTGCQKGYDQKNHKCN---------NLCY------GCGEQECSPLVP 429
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 251 EVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 150
EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 10 EVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 181 DDPRISPLTSQYEC 222
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,597
Number of Sequences: 59808
Number of extensions: 357807
Number of successful extensions: 1031
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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