Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0289
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             29   3.4  
At3g11570.1 68416.m01413 expressed protein similar to At5g06230        29   3.4  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    29   3.4  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   7.9  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 181 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 65
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At3g11570.1 68416.m01413 expressed protein similar to At5g06230
          Length = 427

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 24/86 (27%), Positives = 30/86 (34%)
 Frame = +3

Query: 327 LARFEHSNLFKVKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYAPQTCQYHRGCGHRQR 506
           LA FE    F   LS    T  R    D   + ++ R    RR   +T  Y   C     
Sbjct: 51  LAGFEPHLCFGFLLSPRTLTKERGN--DDVCDYSYGRWVRRRRDVDETSYYGEECRFLDP 108

Query: 507 GHKCNYELFNRNNFSIRYWSWNYRGC 584
           G +C      R +   R W W   GC
Sbjct: 109 GFRCLNN--GRKDSGFRQWRWQPHGC 132


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
           (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 452 TICSANVSVSPRMRAPTARAQMQLR 526
           T+CS+  S+   MRA  AR ++QLR
Sbjct: 804 TLCSSACSIQTGMRAKAARIELQLR 828


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 126 RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 16
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,665,322
Number of Sequences: 28952
Number of extensions: 250560
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)