Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0263
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    31   0.11 
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   1.4  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   5.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   7.3  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   9.6  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   9.6  

>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 327 TSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKTG 473
           T+ T+F S    Y A + H SLL KL+     L+ +   K K ++I  G
Sbjct: 58  TNFTKF-SKFVYYLAITLHTSLLTKLIYCHADLYALQSIKYKRLRINNG 105


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 183 SRASWAFQLYVGIRKTDASCSNTCSASE 266
           +R SWA+    G  K   +CS TC   E
Sbjct: 223 ARVSWAWSTVCGCYKNTYTCSQTCLEDE 250


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -2

Query: 424 KDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEV 326
           K+LIV TS  ++ L +E+  +NAI   KR++E+
Sbjct: 711 KELIVQTSSFQKELVEERERHNAI--SKRLQEI 741


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 243 SNTCSASEWSRSRAIIPIISCCPGSEKNTSLTRFLSGMALYSAFSCHRSLLLKL 404
           ++T S +   +    +P +S      ++ SLTR L G+AL  A S   S LL L
Sbjct: 830 TDTNSVTSDPKPHPFVPSVSENKILNRSFSLTRSLKGLALSLAGSDRASELLSL 883


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -2

Query: 175 TNLKSTRKKVIL*TIVFNQEVFYHFMF 95
           +N+K ++K+++   + F+ EV+  F+F
Sbjct: 266 SNVKCSKKQILFSLLYFSSEVYLSFVF 292


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 309 PGSEKNTSLTRFLSGMALYSAFSCHRSL 392
           PG    T++    S    +SA SCHR+L
Sbjct: 453 PGKTVATTVCHSSSSSGDFSALSCHRNL 480


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 299 QLLSRIRKKYFFDSFLEWDGVIFGF 373
           Q  S I    +FD   EWD V+ GF
Sbjct: 499 QKTSSILVDLYFDFKAEWDNVMLGF 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,291
Number of Sequences: 5004
Number of extensions: 46670
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)