Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0263
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    29   1.8  
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    29   3.2  

>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 315 SEKNTSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKTGAN 479
           S+    ++ F+ G   YS+F  H + + KLV  +  LHC  +  D  +    GAN
Sbjct: 331 SKLRVYISPFIYGTR-YSSFGRHFTKVEKLVEIVDKLHCYVEPGDTIVDFCCGAN 384


>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +3

Query: 300 SCCPGSEKNTSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLH 428
           S  P +E  T+++R L G  + S    +R+LLL LVP +R+LH
Sbjct: 803 SVAPYAEA-TNVSRVLVGDEVIS--QANRTLLLSLVPAMRNLH 842


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,693
Number of Sequences: 37544
Number of extensions: 269817
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)