Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0263
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047657-6|AAK18946.1| 337|Caenorhabditis elegans Serpentine re... 31 0.72
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 29 1.7
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 29 1.7
U51999-4|AAA96085.2| 627|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 8.8
U29377-9|AAA68718.3| 405|Caenorhabditis elegans Hypothetical pr... 27 8.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 8.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 8.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 8.8
AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical ... 27 8.8
AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical ... 27 8.8
AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical ... 27 8.8
AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical... 27 8.8
>AF047657-6|AAK18946.1| 337|Caenorhabditis elegans Serpentine
receptor, class h protein243 protein.
Length = 337
Score = 30.7 bits (66), Expect = 0.72
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 324 NTSLTRFLSGMALYS----AFSCHRSLLLKLVPTIRSLHCIT-QTKDKNMKIKTGANFIL 488
N S++ F+ L S AFSCH ++++ +I +CI QT K+K IL
Sbjct: 3 NCSISPFIDSSYLASPNFVAFSCHIITIIEIPLSIYGAYCILFQTP---AKMKPVQFLIL 59
Query: 489 LLFFFKTLPQCVMCHV 536
L F+ TL +C +
Sbjct: 60 NLHFWNTLSDLFLCFI 75
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 243 SNTCSASEWSRSRAIIPIISCCPGSEKN 326
SN+C A W + CCPGS N
Sbjct: 660 SNSCGADHWCHLGLVPDEYQCCPGSPTN 687
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 246 NTCSASEWSRSRAIIPIISCCPGSEKN 326
NTC + W + + CCPG+ N
Sbjct: 875 NTCPLNHWCHIGSDLSTTVCCPGASTN 901
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 243 SNTCSASEWSRSRAIIPIISCCPGSEKN 326
SN+C A W + CCPGS N
Sbjct: 1078 SNSCGADHWCHLGLVPDEYQCCPGSPTN 1105
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 246 NTCSASEWSRSRAIIPIISCCPGSEKN 326
NTC + W + + CCPG+ N
Sbjct: 1293 NTCPLNHWCHIGSDLSTTVCCPGASTN 1319
>U51999-4|AAA96085.2| 627|Caenorhabditis elegans Hypothetical
protein C43H6.4 protein.
Length = 627
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 155 TCRFQVGSLIQSLVGFSTLCWHKK 226
T R+ +GSL+Q + ST+C+ KK
Sbjct: 39 TIRYILGSLLQDYINESTMCYWKK 62
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
protein R10E8.6 protein.
Length = 1696
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 261 MLSKYYCRRHRFFLCQHKVEKPT 193
+LS++Y R H +++ QH + PT
Sbjct: 922 LLSRFYLRSHSYYVFQHLLGSPT 944
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 544 NRRT*HITHCGKVLKKNNNKMKF 476
NR++ H H GK +KK N ++ F
Sbjct: 30 NRKSIHHNHQGKTIKKKNGRLVF 52
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 544 NRRT*HITHCGKVLKKNNNKMKF 476
NR++ H H GK +KK N ++ F
Sbjct: 30 NRKSIHHNHQGKTIKKKNGRLVF 52
>U29377-9|AAA68718.3| 405|Caenorhabditis elegans Hypothetical
protein K05F1.1 protein.
Length = 405
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 219 IRKTDASCSNTCSASEWSRSRAIIPIISCCPGSEKN 326
I + +C + C +S I I CCP +KN
Sbjct: 105 ISSVNVTCKSDCESSTCILLNNITKEIHCCPADQKN 140
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 415 IVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDP----GQQLIMGIIARDLDHSDAEQV 248
+ GT+F+K L +A+ +A+ L +++ E+ DP G + M + H V
Sbjct: 1756 VAGTTFSKCYLKLSEADDDAVDLLRQLSEIKIIDPTLSTGYPMSMISDEENTSHQLLSNV 1815
Query: 247 LLQEASVFLMPT 212
LL + V + T
Sbjct: 1816 LLTDKEVPITAT 1827
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 415 IVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDP----GQQLIMGIIARDLDHSDAEQV 248
+ GT+F+K L +A+ +A+ L +++ E+ DP G + M + H V
Sbjct: 1756 VAGTTFSKCYLKLSEADDDAVDLLRQLSEIKIIDPTLSTGYPMSMISDEENTSHQLLSNV 1815
Query: 247 LLQEASVFLMPT 212
LL + V + T
Sbjct: 1816 LLTDKEVPITAT 1827
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 415 IVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDP----GQQLIMGIIARDLDHSDAEQV 248
+ GT+F+K L +A+ +A+ L +++ E+ DP G + M + H V
Sbjct: 1756 VAGTTFSKCYLKLSEADDDAVDLLRQLSEIKIIDPTLSTGYPMSMISDEENTSHQLLSNV 1815
Query: 247 LLQEASVFLMPT 212
LL + V + T
Sbjct: 1816 LLTDKEVPITAT 1827
>AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical
protein K05F6.11 protein.
Length = 343
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 316 DPGQQLIMGIIARDLDHSDAE 254
D G+QL++G + RDL H D +
Sbjct: 318 DNGKQLLIGTVFRDLTHCDID 338
>AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical
protein T27A1.2 protein.
Length = 283
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 116 FLIENYGLKYNFFTCRFQVGSLIQSLV 196
F+++N+ LK+ F C FQ+ + L+
Sbjct: 111 FILKNFDLKFGFSNCSFQLVGFNKKLI 137
>AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical
protein C05C8.6 protein.
Length = 581
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 130 VFNQEVFYHFMFNLDFCIQYS 68
+FN F+ F +D+C+QYS
Sbjct: 173 IFNAAYFFQFTDLIDYCMQYS 193
>AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical
protein E01A2.8 protein.
Length = 499
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 316 DPGQQLIMGIIARDLDHSDAE 254
D G+QL++G + RDL H D +
Sbjct: 474 DNGKQLLIGTVFRDLTHCDID 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,969
Number of Sequences: 27780
Number of extensions: 260027
Number of successful extensions: 648
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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