Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0263
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   3.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 517 CGKVLKKNNNKMKFAPVLIFIFLSLVCVIQCKDLIVGTSFNKRLLWQEKAE-YNAIPLKK 341
           CG + + +   + FA  L+FI L  + V     ++V    N R + ++  E +N   L  
Sbjct: 71  CGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNS 130

Query: 340 RVKE 329
             K+
Sbjct: 131 ESKD 134


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +2

Query: 317 RKKYFFDSFLEWDGVIFGFFLPQKPLIKTSTYYKIFTLYN 436
           RKK     + ++ G+++   LP    I +  Y +  T  N
Sbjct: 185 RKKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLN 224


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 EMIENFLIENYGLKYNFFTCRFQVGSLIQS 190
           ++++NF I++   K N   CR   G L++S
Sbjct: 590 KVLQNFDIKDKNKKVNVAGCRCVKGILLKS 619


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,076
Number of Sequences: 438
Number of extensions: 3286
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)