Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0263
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43240.1 68418.m05284 hypothetical protein contains Pfam prof...    29   2.7  
At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-contain...    28   3.5  
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ...    27   8.2  

>At5g43240.1 68418.m05284 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 512

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 408 PTIRSLHCITQTKDKNMKIKTGANFILLLFFFKTLP 515
           P I+    I + K+K + ++ G +F+ LLF F TLP
Sbjct: 8   PVIKLKLLIDEEKNKVVFVEAGKDFVDLLFSFFTLP 43


>At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 718

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 101 EMIENFLIENYGLKYNFFTCRFQVGSLIQSLVGFSTLCWHK 223
           E I   L+   G +Y +  C FQ GSL++ + G + + +H+
Sbjct: 240 EEIFELLMSMDGTRYEW-DCSFQFGSLVEEVDGHTAVLYHR 279


>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 525

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 333 KKYFFRIRDNN*LWV----L*PVT*TTRMLSKYYCRRHRFFLCQHKVEKPTRLW 184
           K+++ R   N  LW         T   R+ S Y C+   F L QH  E P + W
Sbjct: 291 KEHYLRFHVNGLLWEENKRCSACTHPVRLQSFYACKDCDFILHQHCAESPKKEW 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,139,928
Number of Sequences: 28952
Number of extensions: 233046
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)