Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0258
         (338 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    22   1.5  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   1.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   2.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   2.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   2.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   2.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   4.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   4.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   6.0  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 329 TLLMACRCDSNTAQYERNRSF-GHLVMHSAERPVVRSYHPRDYA 201
           T  + C+C      + R     GH+  H+ E+P   +Y  R +A
Sbjct: 3   THTLPCKCTICPKAFSRPWLLQGHIRTHTGEKPFSCTYCNRAFA 46


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 62  STSRLGFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 184
           +T + G  C+       C  PPD  G+T+S S P+  R +S
Sbjct: 151 TTCKNGGTCQDLGKTFMCRCPPDWEGTTLSQS-PNRRRASS 190


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 248 SAERPVVRSYHPRDY 204
           SA  P+VRSY P  Y
Sbjct: 281 SAATPLVRSYAPERY 295


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 243 RAAGGAKLPSAGLC 202
           ++  G ++PSAGLC
Sbjct: 99  KSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 243 RAAGGAKLPSAGLC 202
           ++  G ++PSAGLC
Sbjct: 47  KSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 243 RAAGGAKLPSAGLC 202
           ++  G ++PSAGLC
Sbjct: 230 KSCQGCEMPSAGLC 243


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 4   VMHVLRKKPIASISAIQMGFDVAS 75
           V+ +  +KP +    ++MG D+AS
Sbjct: 200 VVAMFSRKPCSINENLKMGLDIAS 223


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 4   VMHVLRKKPIASISAIQMGFDVAS 75
           V+ +  +KP +    ++MG D+AS
Sbjct: 200 VVAMFSRKPCSINENLKMGLDIAS 223


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 242 ERPVVRSYHPRDY 204
           E P  R+Y+P DY
Sbjct: 315 EAPCPRNYNPADY 327


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 242 ERPVVRSYHPRDY 204
           E P  R+Y+P DY
Sbjct: 315 EAPCPRNYNPADY 327


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 174 LAESGKDMLTVEPRESGGSKQCDFTS 97
           L +S  D     PR  GG+K   F++
Sbjct: 97  LKDSSSDSEDERPRPGGGTKYQTFSN 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,555
Number of Sequences: 336
Number of extensions: 1472
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)