Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0258
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   2.4  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   3.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   4.2  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     24   7.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   9.6  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    23   9.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    23   9.6  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   9.6  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    23   9.6  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 237 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 112
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 192 SKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKPRRDVEA 58
           S+A A LA +       + RE    KQ + T R+SH + RR+++A
Sbjct: 164 SEARARLANTQGKKAKRKDRE----KQLELTRRLSHLQKRRELKA 204


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 155  ICSLWSPESREALNNVTLLVAFRIQNRDATSKPIWIAEIDAI 30
            I S W PE++E + N+  L    +   + T K  ++ E D+I
Sbjct: 1174 ILSEWLPEAKERIRNIKKLKTDMLTKLENTVK--YLCEYDSI 1213


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 74  LGFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGS 223
           +GF+ +T   K +C+ P   R     I    +  +   L+   H PA G+
Sbjct: 33  IGFKVKTTAPKQYCVRPNGGR-----IEANSAVSVEVILQPLDHEPAPGT 77


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 122  PPDSRGSTVSISLPDSARLASALEAFRHNP 211
            P D +  T S     S+ L   L  F+H+P
Sbjct: 1010 PEDQKRKTFSFDTSKSSSLLKKLYRFKHDP 1039


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 223 LRTTGRSAECITKCPKLRF 279
           + T  RSA C+ + P+LRF
Sbjct: 10  ITTLLRSARCMNRMPQLRF 28


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 158 LPDSARLASALEAFRHNPAD 217
           LPD  RL S + A R  PAD
Sbjct: 748 LPDLERLISRVHAGRSKPAD 767


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 152 ISLPDSARLASALEAFRHNP 211
           ++LP SA+L   ++A ++NP
Sbjct: 309 VALPQSAKLFQKVKALKNNP 328


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 35  HRSPRSKWASTSRLGFECETRLVKSHCLEPPD-SRGSTVSISLPDSA 172
           H  P  +WA   +     E+    SH +  P+ S  ST S  +  S+
Sbjct: 112 HIGPNGEWAKRRKPRTTVESNASSSHLVSKPESSHPSTGSFEVKSSS 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,416
Number of Sequences: 5004
Number of extensions: 25056
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)