Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0258
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06)         30   0.55 
SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)                  30   0.55 
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   1.3  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.7  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   2.2  
SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.2  
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_37315| Best HMM Match : DUF1565 (HMM E-Value=5.2)                   27   5.1  
SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  
SB_4725| Best HMM Match : Mt_ATP-synt_D (HMM E-Value=1.4)              26   6.8  
SB_36124| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    26   9.0  
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  

>SB_25670| Best HMM Match : Sarcoglycan_1 (HMM E-Value=6.2e-06)
          Length = 436

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 323 LMACRCDSNTAQYERNRSFGHLVMHSAERPVVRSYHPRDYA*TPLRPKP 177
           L  C+ D N A   +NR + H   ++ E+P++          TPL P P
Sbjct: 254 LFVCKNDQNNAS-SQNRVYKHKPKNATEKPLIAGLSGPTSVYTPLDPPP 301


>SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)
          Length = 217

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -1

Query: 284 ERNRSFGHLVMHSAERPVVRSYHPRDYA*TPLRPKPA*PNPARICSLWSPESREALNNVT 105
           E N     +  H +  P+ R +HP      PL P+    +   +  ++ PESREA   V 
Sbjct: 144 ESNEPLPSMFHHESNEPLPRMFHPESNE--PL-PRMFTESNEHLPRMFHPESREAAVVVK 200

Query: 104 LLVAFRIQNRDA 69
             V  RI +++A
Sbjct: 201 PFVPVRIAHQNA 212


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 192 RRSGIIPRMVASHHRPLGRVHNQ----MSETAVPLVLSSITIATTSHQ*GKTN 338
           R+  + PR  A HHR     H Q    +++T+  +  +S+TIA TS    KT+
Sbjct: 680 RQDVVHPRQDADHHRQDAEHHRQDADHIAKTSFTIGKTSVTIAKTSVTIAKTS 732


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 47  RSKWASTSRLGFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 217
           R +  +++R  +  E +L + H L PP        +S   SA  +SA   F   P D
Sbjct: 26  RGRPTASARARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 47   RSKWASTSRLGFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 199
            R +W+      F+ E  L    CL PP++ G    I L D + LA    A+
Sbjct: 1250 RGRWSDFFSNLFQLE-HLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 195 ASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKPRRDVEAHLDRGDRCYR 28
           +SKA+  L +  K  L  + RES G+K+ D   +    K    V+A LD+  +  R
Sbjct: 173 SSKAK-KLIKGRKKQLKEQKRESKGAKKTDGIEKAREPKTESPVKAVLDKKPKAPR 227


>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 129 SGGSKQCDFTSRVSHSKPRRDVEAHLDRGDRCY 31
           S G+K C+           RDV  H+D+  +CY
Sbjct: 50  SQGAKLCEEIKDSFEELEERDVSVHIDKFSKCY 82


>SB_37315| Best HMM Match : DUF1565 (HMM E-Value=5.2)
          Length = 760

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 204 CLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKP 76
           CL    A  S  ++GK +  + P +S  S++   T  V +S+P
Sbjct: 271 CLGVLVARGSREQAGKWIKLLPPGKSASSEKSSVTLTVENSRP 313


>SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +2

Query: 38  RSPRSKWASTSRLGFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 217
           R  RS W+S  R  +EC+ R     C++  D     V      S    S +E  R    D
Sbjct: 285 RYVRSTWSSDDRPSYECQLR--SQGCMDDGDCHYRVVPAEC--SCHGPSCIEHKREARTD 340

Query: 218 GS 223
           GS
Sbjct: 341 GS 342


>SB_4725| Best HMM Match : Mt_ATP-synt_D (HMM E-Value=1.4)
          Length = 465

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 15  VKKKTDSIDLRDPNGLRRRVSVL 83
           VK+K+DS   +DPN L+RR  +L
Sbjct: 175 VKQKSDSKIPKDPNRLKRRHMIL 197


>SB_36124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 222 ASHHRPLGRVHNQMSETAVPLVLSSITIATTS 317
           A  HR LG+ H + SE AV   +++I   T S
Sbjct: 10  AGRHRELGKSHIKKSEEAVQRTITAIRNFTNS 41


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 201 LNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKPRR 70
           L  S +E    E+G +  +VEPR  G S     T+ +S S   R
Sbjct: 318 LERSDSEMRENEAGDEKTSVEPRSDGVSTSSQDTAGLSESNGGR 361


>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 122 PPDSRGSTVSISLPDSARLASALEAFRHNPAD 217
           PP    +   +S P S R+ +AL  FR NP D
Sbjct: 524 PPQEIDAVYKLSQPTSRRVKAALRGFR-NPHD 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,865,695
Number of Sequences: 59808
Number of extensions: 213273
Number of successful extensions: 554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)