Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0258
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    28   2.0  
AL110484-20|CAB54412.1|  195|Caenorhabditis elegans Hypothetical...    27   2.6  
Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U88182-1|AAB42309.1|  101|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    26   7.9  

>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = -3

Query: 270 FRTFGYALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 91
           F  FG+  G +A    L   G   + +    ++    K ++  EP+E+   +  D+ + +
Sbjct: 291 FGGFGFGFGASAVNKSLK--GQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNEL 348

Query: 90  SHSKPRR 70
           +HSK  +
Sbjct: 349 THSKTEK 355


>AL110484-20|CAB54412.1|  195|Caenorhabditis elegans Hypothetical
           protein Y38E10A.20 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 59  ASTSRLGFECETRLVKSHCLEPPDSRGSTVS 151
           +S +RLG E   ++  S C  PP  + ST S
Sbjct: 2   SSVTRLGEEMNKKISISECKNPPSKKNSTSS 32


>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 219 VASHHRPLGRVHNQMSETAVPLVLSSI 299
           +A HHRPL R  ++  E   P++  S+
Sbjct: 509 IARHHRPLTRQPSKFHEATQPIISDSL 535


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 219 VASHHRPLGRVHNQMSETAVPLVLSSI 299
           +A HHRPL R  ++  E   P++  S+
Sbjct: 509 IARHHRPLTRQPSKFHEATQPIISDSL 535


>U88182-1|AAB42309.1|  101|Caenorhabditis elegans Hypothetical
           protein C53C11.4 protein.
          Length = 101

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 259 WLCTRPSGRWCEATIRGIMPERL*GRSQPSRIRQGYAHCGAPRVG 125
           W+   PSG++ +  +R +  E   G +      +G AH G    G
Sbjct: 13  WIVLEPSGKFLKMLLRDLRGETHRGETHHGETHRGEAHRGETHRG 57


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 197 TPLRPKPA*PNPARICSLWSPESREALNN 111
           T L   PA PN AR  S W  E+  + NN
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNN 147


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 197 TPLRPKPA*PNPARICSLWSPESREALNN 111
           T L   PA PN AR  S W  E+  + NN
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNN 147


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 197 TPLRPKPA*PNPARICSLWSPESREALNN 111
           T L   PA PN AR  S W  E+  + NN
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNN 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,748,018
Number of Sequences: 27780
Number of extensions: 149977
Number of successful extensions: 409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)