Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0258
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   7.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 ALGRAAGGAKLPSAGLCLNASKAEASL 172
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 ALGRAAGGAKLPSAGLCLNASKAEASL 172
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 ALGRAAGGAKLPSAGLCLNASKAEASL 172
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 ALGRAAGGAKLPSAGLCLNASKAEASL 172
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 302  SNTAQYERNRSFGHLVMHSAERPVVRS 222
            S +A  +  R  GH V+HSA+  V  S
Sbjct: 926  STSAGLQTIRLSGHSVLHSAQSVVASS 952


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 269 FGHLVMHSAERPVVRSYHPRD 207
           FG+L      R +   YHP D
Sbjct: 331 FGYLPQDMVGRSLFDFYHPED 351


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 269 FGHLVMHSAERPVVRSYHPRD 207
           FG+L      R +   YHP D
Sbjct: 37  FGYLPQDMVGRSLFDFYHPED 57


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 198 SGIIPRMVASHHRPLGRVHNQMSETAV 278
           +G+I +     H  L   H+ +  TAV
Sbjct: 130 TGLIKQETLQRHHHLQNHHHHLQSTAV 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,049
Number of Sequences: 438
Number of extensions: 1866
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)