Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0258
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57680.1 68416.m06426 peptidase S41 family protein similar to...    29   0.79 
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   4.2  
At1g14740.1 68414.m01762 expressed protein                             27   4.2  
At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /...    26   5.6  
At2g38070.1 68415.m04673 expressed protein  and genscan                26   5.6  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    26   5.6  
At5g42630.1 68418.m05189 myb family transcription factor (KAN4) ...    26   7.4  
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    26   7.4  
At4g27120.2 68417.m03898 expressed protein                             25   9.7  
At4g27120.1 68417.m03897 expressed protein                             25   9.7  
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    25   9.7  
At1g73350.1 68414.m08490 expressed protein                             25   9.7  
At1g63480.1 68414.m07178 DNA-binding family protein contains a A...    25   9.7  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    25   9.7  

>At3g57680.1 68416.m06426 peptidase S41 family protein similar to
           PSII D1 protein processing enzyme (GI::7268527)
           [Arabidopsis thaliana]; similar to SP|Q55669
           Carboxyl-terminal processing protease precursor
           (Photosystem II D1 protein processing peptidase) (EC
           3.4.21.102) [strain PCC 6803] {Synechocystis sp.};
           contains Pfam profile PF03572: Peptidase family S41B
          Length = 516

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 47  RSKWASTSRLGFECETRLV-KSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 214
           RS  AS+SRLGF  ET+ V +SH +   +S      + L  +  +A +L  F  +PA
Sbjct: 41  RSCLASSSRLGFYTETKTVSESHGVIVDNSTIGRRLLGLAAAVSVAVSLSIFCDSPA 97


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
            domain-containing protein / RNA recognition motif
            (RRM)-containing protein KIAA0122 gene , Homo sapiens,
            EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
            recognition motif. (a.k.a. RRM, RBD, or RNP domain),
            PF01585: G-patch domain, weak hit to PF00641: Zn-finger
            in Ran binding protein and others
          Length = 1105

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -3

Query: 264  TFGYALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSH 85
            +FG  LG A+  A +    +  +AS A  S++ SG+   +  P      ++   TS    
Sbjct: 900  SFGGTLGGASSSASVQMPPILPSASPASVSVSGSGRRRFSETPTAGPTHREQPQTSYRDR 959

Query: 84   SKPRRDV 64
            +  RR++
Sbjct: 960  AAERRNL 966


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 231 GAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK 115
           G +L  + LC N+ K   SL + GK+++T     S   K
Sbjct: 67  GNELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDK 105


>At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 354

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 269 FGHLVMHSAERPVVRSYHPRDYA*TPLRPKPA*P 168
           F H+V      P+  S+H  D     L P+P+ P
Sbjct: 281 FAHVVSRFVSIPITCSFHTEDSQPASLNPQPSAP 314


>At2g38070.1 68415.m04673 expressed protein  and genscan
          Length = 619

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 282 EEPQFRTFGYALGRAAGGAKLPS 214
           EEP+    GY +GRAA   ++PS
Sbjct: 337 EEPRASWDGYLIGRAAAPMRMPS 359


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 129 SGGSKQCDFTSRVSHSKPRRDVEAHLDRGDRCYR 28
           SGG+++CD  +  + SKP    E  ++   R Y+
Sbjct: 220 SGGNRECDVKAEENKSKPEERKEKVVEEQARRYQ 253


>At5g42630.1 68418.m05189 myb family transcription factor (KAN4)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA GARP-like putative
           transcription factor KANADI4 (KAN4)  GI:15723592
          Length = 276

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 38  RSPRSKWASTSRLGFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFR 202
           R+PR +W ST    F    +L+  H    P S    +++     A + S L+ +R
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 158


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 128 DSRGSTVSISLPDSARLASALEAFRHN 208
           DS G  V   LPD   LA+  EA RH+
Sbjct: 399 DSSGHQVHPKLPDYDILAARFEAIRHS 425


>At4g27120.2 68417.m03898 expressed protein
          Length = 298

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/84 (21%), Positives = 36/84 (42%)
 Frame = -3

Query: 288 VREEPQFRTFGYALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQC 109
           V E PQ +     + RA GG ++        AS + +++ E+G      +  E+GG+ Q 
Sbjct: 35  VAEPPQVQP-RENVARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGT-QA 92

Query: 108 DFTSRVSHSKPRRDVEAHLDRGDR 37
             + +    +  R+ +   +   R
Sbjct: 93  RASKKKEKKRQEREAQRQAEEATR 116


>At4g27120.1 68417.m03897 expressed protein
          Length = 298

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/84 (21%), Positives = 36/84 (42%)
 Frame = -3

Query: 288 VREEPQFRTFGYALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQC 109
           V E PQ +     + RA GG ++        AS + +++ E+G      +  E+GG+ Q 
Sbjct: 35  VAEPPQVQP-RENVARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGT-QA 92

Query: 108 DFTSRVSHSKPRRDVEAHLDRGDR 37
             + +    +  R+ +   +   R
Sbjct: 93  RASKKKEKKRQEREAQRQAEEATR 116


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 50  SKWASTSRLGFECETRLVKSHCLEPPDS 133
           S+W S     F C T     HC   PDS
Sbjct: 831 SRWKSRCAEYFPCSTHFEGKHCSLMPDS 858


>At1g73350.1 68414.m08490 expressed protein
          Length = 194

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 150 LTVEPRESGGSKQCDFTSRVSHSKPRR 70
           L VEP+   G +Q D   +V   KP+R
Sbjct: 91  LRVEPKPKSGIRQQDLLRKVVEVKPKR 117


>At1g63480.1 68414.m07178 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 361

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 258 GYALGRAAGGAKLPSAGLCLNASKAEASLAESGKDML 148
           G  L    GG++  + GL ++ S+ + S+   G DML
Sbjct: 225 GSYLVNEEGGSRSRTGGLSVSLSRPDGSIIAGGVDML 261


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 197 TPLRPKPA*PNPARICS 147
           +P+RP PA P+P RI S
Sbjct: 274 SPVRPTPAPPSPPRISS 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,416,498
Number of Sequences: 28952
Number of extensions: 145836
Number of successful extensions: 397
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)