Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0256
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0557 + 4394754-4396040                                           29   3.1  
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     28   9.4  
07_01_0739 + 5631034-5631166,5631246-5631682,5632455-5632574           28   9.4  

>11_01_0557 + 4394754-4396040
          Length = 428

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -3

Query: 364 PLSRSPTGSAFTASVSLGF 308
           PL R+P+G+ F +SVSLGF
Sbjct: 319 PLFRTPSGAIFCSSVSLGF 337


>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 634 MYK*Y*LMFTFLVSTYK*YIIATFFLTCRILQYLEQNATDN 756
           +YK +   FTFL+ T   ++ A FFL   IL Y E N  +N
Sbjct: 27  LYKFFFGWFTFLLETSPIFLFAGFFLGI-ILAYGEPNIPEN 66


>07_01_0739 + 5631034-5631166,5631246-5631682,5632455-5632574
          Length = 229

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 368 LTAFPIADRLSVHCVRLV--RLHYHQRS*RRHKLVLQSY 258
           L +F +A   +V CV LV  RL +H R  ++HK+ LQ Y
Sbjct: 149 LCSFGVAAAATV-CVFLVGGRLQHHHRQQQQHKIQLQLY 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,172
Number of Sequences: 37544
Number of extensions: 214926
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)