Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0253
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    26   1.2  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   1.6  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   1.6  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    25   2.1  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   2.1  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    24   3.7  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    24   4.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    23   6.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    23   6.5  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSVSG 128
           RW  + LPP     G+PQ  +R+ TAR I    + G
Sbjct: 63  RWYRSFLPPED---GKPQKLKRTLTARHIQMIGIGG 95


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 100 GGQAHGPHGVKWSPEP----IDSFYSTTAAPPLKPES 2
           G  AH  +    SP P     +S +STT+ PPL P +
Sbjct: 342 GYSAHTQNSSAQSPHPRVFSANSAFSTTSPPPLTPST 378


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 227 RHSAATTPQCAGPPTAAATQHDR 159
           R+S   TP+ + PP+ A+T H R
Sbjct: 550 RNSKPATPKASRPPSIASTVHRR 572


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 213 HHATVRGAAHSRRDAARPLAV 151
           H+A VR  AH++ DA  P+ +
Sbjct: 134 HYANVRLLAHAKTDAGEPVLI 154


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 217 LPPRHSARGRPQPPRRSTTARSICTRSVSGPRLL 116
           +P R SA     PPRR+  ARS  T +   PR +
Sbjct: 1   MPRRRSAA---PPPRRAAPARSASTAAALPPRTM 31


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 148 CTRSVSGPRLLFKCLYGGQAHGP 80
           CT+     R+   C+YGG   GP
Sbjct: 215 CTKFGKSSRIRNTCVYGGVPRGP 237


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 194 PRTVAWWQRCAAPPSPQRAF 253
           PRT +W QR  A P+ +  F
Sbjct: 201 PRTYSWHQRLLARPASKATF 220


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 212 TTPQCAGPPTAAATQHDR 159
           TTPQ AG   + AT H R
Sbjct: 160 TTPQRAGAGVSTATSHTR 177


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 226 GTALPPRHSARGRPQPPRRSTTARSICTRSVSG 128
           GT+ P    AR  P P + S+T  S   R VSG
Sbjct: 55  GTSEPNVFKARPIPPPRQVSSTIGSSTGRKVSG 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,746
Number of Sequences: 5004
Number of extensions: 22452
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)