Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0253
(284 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7) 31 0.15
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) 30 0.26
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.45
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61) 28 1.4
SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047) 28 1.4
SB_15807| Best HMM Match : Pec_lyase_N (HMM E-Value=3.5) 28 1.4
SB_31022| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 27 2.4
SB_15754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 27 3.2
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3) 26 4.2
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 26 4.2
SB_1907| Best HMM Match : Beta-lactamase (HMM E-Value=6e-06) 26 4.2
SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4) 26 5.6
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_33683| Best HMM Match : Beta-lactamase (HMM E-Value=0.00036) 25 7.4
SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30) 25 7.4
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7) 25 9.8
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20) 25 9.8
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 25 9.8
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 25 9.8
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 25 9.8
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 25 9.8
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2) 25 9.8
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) 25 9.8
>SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)
Length = 433
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSV 134
R GG++ PPR RP PPR+S +RS+ S+
Sbjct: 375 RKGGSSAPPRGGTAERP-PPRQSAPSRSMAITSL 407
>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
Length = 1624
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSV 134
R GG++ PPR RP PPR+S RS+ S+
Sbjct: 639 RKGGSSTPPRGCTAQRP-PPRQSAPGRSMAITSL 671
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.5 bits (63), Expect = 0.45
Identities = 24/65 (36%), Positives = 25/65 (38%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSVSGPRLLFKCLYGGQAHGPHGVKWSPE 56
R G PPR + RGR PP R R G K YG A P GV PE
Sbjct: 505 RGGSRGGPPRGAPRGRSGPP-RGRGGGDFGGRGGRGGTTPGKRKYG--ADNPQGVVGYPE 561
Query: 55 PIDSF 41
P F
Sbjct: 562 PKKRF 566
>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
Length = 1226
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSV 134
R GG++ PP RP PPR+S +RS+ S+
Sbjct: 846 RKGGSSAPPWGGTAERP-PPRQSAPSRSMAITSL 878
>SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047)
Length = 983
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSV 134
R G++ PPR RP PPR+S +RS+ ++
Sbjct: 229 RKSGSSAPPRGGTAERP-PPRQSAPSRSMAINNL 261
>SB_15807| Best HMM Match : Pec_lyase_N (HMM E-Value=3.5)
Length = 386
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSV 134
R G++ PPR RP PPR+S +RS+ ++
Sbjct: 323 RKSGSSAPPRGGTAERP-PPRQSAPSRSMAINNL 355
>SB_31022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/52 (25%), Positives = 20/52 (38%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSVSGPRLLFKCLYGGQAHGP 80
RW L P+ P+R +S+ + + L KCL G + P
Sbjct: 91 RWTSDRLKSNFHRVHVPEEPQRKVARKSVVFFCIPDKKALIKCLDGSDKYPP 142
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSIC-TRSVSGP 125
R GG++ PPR P R+S +RS+ T SV P
Sbjct: 1535 RKGGSSAPPRGGGTAERLPLRQSAPSRSMAITSSVDRP 1572
>SB_15754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -2
Query: 163 TARSICTRSVSGPRLLFKCLYGGQAHGPHGVKWSPEPIDSFYSTTAAP 20
TA ++ ++ GP+ L L+ H +W PE +++ +T+ P
Sbjct: 106 TAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWGPELNEAYQTTSVTP 153
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 227 RHSAATTPQCAGPPTAAATQHDRSQYLHPLRLRT 126
RH P PP +A++ + +Y+HP+R RT
Sbjct: 875 RHRVPHLPHT--PPRSASSPYATVRYIHPIRHRT 906
>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
Length = 487
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 99 PYKHLNKSRGPETERVQILRAVVLRRGGCGRPRALWRGGSAVPPHLH 239
P++ N G +LR L +GGC R W G H+H
Sbjct: 34 PFRLRNCWEGRSVRASSLLRQ--LAKGGCAARRLSWDGSCLSVHHIH 78
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 257 LKKLSEVKVGRHSAATTPQCAGPPTAAATQHDRSQYLHPLRLRTS 123
+K + V+ SA T + PP+A+ +QH+R +L +S
Sbjct: 54 IKSANSVESFGSSADNTGKAKRPPSASRSQHERETSSRSTKLNSS 98
>SB_1907| Best HMM Match : Beta-lactamase (HMM E-Value=6e-06)
Length = 156
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2
Query: 163 TARSICTRSVSGPRLLFKCLYGGQAHGPHGVKWSPEPIDSFYSTTAAPP 17
TA ++ ++ GP+ L L+ H +W PE ++ Y TT+ P
Sbjct: 106 TAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPE-LNEPYPTTSVTP 153
>SB_55538| Best HMM Match : zf-BED (HMM E-Value=1.4)
Length = 1108
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 131 RTSTFI*VLIWGASSRPTWC 72
R TF+ VL+W A SR T C
Sbjct: 998 RFQTFVSVLVWTACSRRTRC 1017
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 93 KLTAHMVLSGHRNP*TVFTVQRLPHP 16
K H+ L NP +FT +++PHP
Sbjct: 272 KTEYHITLKPDTNPVCLFTPRKVPHP 297
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -1
Query: 230 GRHSAATTPQCAGPPTAAAT----QHDRSQYLHPLR 135
GRHS ++P+ A PP + + Q ++S HP R
Sbjct: 400 GRHSGQSSPRQASPPQSVKSPIHFQANKSPPFHPQR 435
>SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 269 CRSKLKKLSEVKVGRHSAATTPQCAGPPTAAAT 171
C SK +K E K G AT P+ G P+AA T
Sbjct: 4 CCSKSQKKYEAKDG----ATNPKATGAPSAATT 32
>SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 133 SGPRLLFKCL-YGGQAHGPHGVKWSPE 56
SG +L+ + L YG H HG +W PE
Sbjct: 365 SGVKLVERNLRYGEWGHKRHGYEWRPE 391
>SB_33683| Best HMM Match : Beta-lactamase (HMM E-Value=0.00036)
Length = 143
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 163 TARSICTRSVSGPRLLFKCLYGGQAHGPHGVKWSPEP 53
TA ++ ++ GP+ L L+ H +W PEP
Sbjct: 106 TAANLLLTTIGGPKELTAFLHNMGDHVTRPDRWEPEP 142
>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
Length = 591
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 214 PPRHSARGRPQPPRRSTTARSICTRSVSGPRLLFKCLYGGQA 89
PP +AR RPQP S R + R S P L G+A
Sbjct: 327 PPPAAARSRPQPFAPSPFTRHMSLRYRSTPMSLTPLKDSGKA 368
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = -2
Query: 214 PPRHSARGRPQPPRRSTTARSICTRSVSGPRLLFKCLYGGQAHGPHGVKW 65
PP + P PP + C R +G R++ GQ PH W
Sbjct: 398 PPPTNGPPPPPPPTNGPPSEGKCGRKPAGARII-----NGQNAQPHSWPW 442
>SB_57200| Best HMM Match : Plasmodium_HRP (HMM E-Value=4.7)
Length = 346
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 214 PPRHSARGRPQPPRRSTTA 158
PP+ S R P PP++S A
Sbjct: 241 PPKQSVRALPWPPKQSVRA 259
>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
Length = 1557
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 265 AVS*KSSLR*RWGGTALPPRHSARGRPQPP 176
A+S + R + G A+ PR S RGR + P
Sbjct: 1049 AISPQRGYRPAFRGYAISPRQSGRGRKKTP 1078
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSVSGPRLL 116
R G PP S+ P PP R + RS+ R L
Sbjct: 201 RHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPL 240
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -2
Query: 235 RWGGTALPPRHSARGRPQPPRRSTTARSICTRSVSGPRLL 116
R G PP S+ P PP R + RS+ R L
Sbjct: 113 RHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPL 152
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 224 HSAATTPQ-CAGPPTAAATQHDRSQYLHPLRLRT 126
HS T + C PPTA H +HPL T
Sbjct: 315 HSPPTAVRPCHSPPTAVRPCHSPPNTVHPLPFPT 348
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -3
Query: 219 RCHHATVRGAAHSRRDAARPLAVSAPAPSP 130
+ HHA V HS + PAPSP
Sbjct: 611 KAHHANVDKMTHSANEDTPRSNAEIPAPSP 640
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 100 GGQAHGPHGVKWSPEP 53
GGQA P G +W+ +P
Sbjct: 392 GGQAQAPSGSEWAEQP 407
>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
Length = 334
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 223 TALPPRHSARGRPQPPRRS 167
T P + R RPQPP+RS
Sbjct: 198 TPSPTSETPRPRPQPPKRS 216
>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
Length = 1675
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -2
Query: 277 PISVAVS*KSSLR*RWGGTALPPRHSAR---GRPQPPRRSTTARSICTRSVSGPRLLFK 110
P+ +++ K R +GG PR R RP+P RS C V+ L+K
Sbjct: 1613 PLQASLNVKKGARVPYGGQFRLPRRRERTMQQRPRPHLRSLPCLHTCNERVNNRMKLWK 1671
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,839
Number of Sequences: 59808
Number of extensions: 230882
Number of successful extensions: 787
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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