Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0253
         (284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    31   0.18 
AF067947-3|AAC19231.1|  451|Caenorhabditis elegans Hypothetical ...    29   0.71 
U80033-1|AAM15607.1|  381|Caenorhabditis elegans Synaptotagmin p...    28   0.94 
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    28   1.2  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    28   1.2  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homo...    27   2.9  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protei...    27   2.9  
Z48544-1|CAA88435.1|  473|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear recep...    25   6.6  
AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormo...    25   6.6  
AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical ...    25   6.6  
AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    25   6.6  
U23519-4|AAK31501.1|  358|Caenorhabditis elegans Toxin-regulated...    25   8.7  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    25   8.7  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 214 PPRHSARGRPQPPRRSTTARSICTRSVSGPR 122
           PPR + R  P PPRR   +RS   RS S PR
Sbjct: 107 PPRRTRRS-PSPPRRRRISRSPVRRSRSPPR 136


>AF067947-3|AAC19231.1|  451|Caenorhabditis elegans Hypothetical
           protein T10B5.8 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 208 RHSARGRPQPPRRSTTARSICTRSVSGPRLLFKCLYGG-QAHGPHG 74
           R +  G+P+P         +  R V   +  ++C + G Q HG HG
Sbjct: 154 RFTTYGKPKPLSTEQVETEVVDRFVYAAKFAYECGFDGIQLHGAHG 199


>U80033-1|AAM15607.1|  381|Caenorhabditis elegans Synaptotagmin
           protein 4 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 100 GGQAHGPHGVKWSPEPIDSFYSTTAAP-PLKP 8
           GG   GP G+K SP P+ S  S  + P P+ P
Sbjct: 60  GGFPKGPGGLKQSPSPLQSPLSNDSTPSPVVP 91


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 127 VRRRSGCRYCERSCCVAAAVGGPAHCGVVAALCRP 231
           V+R+ GC  C   C      GG   CG     CRP
Sbjct: 57  VKRQGGCGCCGCGCGCCGCGGGGGGCG--CCCCRP 89


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 127 VRRRSGCRYCERSCCVAAAVGGPAHCGVVAALCRP 231
           V+R+ GC  C   C      GG   CG     CRP
Sbjct: 58  VKRQGGCGCCGCGCGCCGCGGGGGGCG--CCCCRP 90


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 127 VRRRSGCRYCERSCCVAAAVGGPAHCGVVAALCRP 231
           V+R+ GC  C   C      GG   CG     CRP
Sbjct: 59  VKRQGGCGCCGCGCGCCGCGGGGGGCG--CCCCRP 91


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 90  ACPPYKHLNKSRGPETERVQILRAVV 167
           ACPP  HL ++R    ERV+  ++++
Sbjct: 313 ACPPRIHLERNRPEFIERVEARQSII 338


>U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homolog
           protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 272 FC-RSKLKKLSEVKVGRHSAATTPQCAGPPTAAATQHDRSQY 150
           FC + K+ K         S ++ P C+ PP   +++H R+ +
Sbjct: 59  FCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAH 100


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 133 RRSGCRYCERSCCVAAAVGGPAHCGVVAALCRPTFTSE 246
           + +GC+ CE     A A GG   C      C P FT E
Sbjct: 332 KNTGCKTCENGGKCAEAAGGLQKCE-----CSPGFTGE 364


>U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protein 1
           protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 272 FC-RSKLKKLSEVKVGRHSAATTPQCAGPPTAAATQHDRSQY 150
           FC + K+ K         S ++ P C+ PP   +++H R+ +
Sbjct: 59  FCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAH 100


>Z48544-1|CAA88435.1|  473|Caenorhabditis elegans Hypothetical
           protein ZK945.1 protein.
          Length = 473

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 106 LYGGQAHGPHGVKWSPEPIDSFYSTTAA 23
           L GG A    G KW+P+     +STT A
Sbjct: 106 LQGGYADKASGRKWTPDTRTVVFSTTKA 133


>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 183 SRRDAARPLAVSAPAPSPDLDFYLSAYMGGKLTAHMVL-SGHRN 55
           S R A +P  V    P P  + Y+  ++  ++T  M+L   H+N
Sbjct: 324 SYRSATKPDTVPKQTPPPTHNSYVLPHIDERMTRKMILMKNHQN 367


>AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear receptor
           NHR-90 protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 130 RRRSGCRYCERSCCVAAAVGGPAHCGVVAALCRP 231
           RRR+G +Y    C          HCG  A  C+P
Sbjct: 50  RRRAGTKYLRLKCL-------SVHCGEAARFCKP 76


>AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 90 protein.
          Length = 393

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 130 RRRSGCRYCERSCCVAAAVGGPAHCGVVAALCRP 231
           RRR+G +Y    C          HCG  A  C+P
Sbjct: 35  RRRAGTKYLRLKCL-------SVHCGEAARFCKP 61


>AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical
           protein F13H6.1 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 197 AGPPTAAATQHDRSQYLHPLRLRTSTFI 114
           A  PTA ++  D+S Y   L+ R +TF+
Sbjct: 27  AEEPTATSSSDDKSDYRLDLKKRLTTFL 54


>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 177 GGCGRPRALWRGGSAVPPHL 236
           GG G   AL RGG  VPPHL
Sbjct: 9   GGSGNA-ALNRGGRYVPPHL 27


>U23519-4|AAK31501.1|  358|Caenorhabditis elegans Toxin-regulated
           target of p38mapkprotein 2 protein.
          Length = 358

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 217 LPPRHSARGRPQPPRRS 167
           LPP H+  G P PP ++
Sbjct: 53  LPPNHNRNGSPLPPSKT 69


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
           protein Y32H12A.8 protein.
          Length = 3901

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 174 DAARPLAVSAPAPSPDLDFYLSAYMGGKLTAHMVLSGH 61
           D  R     A  PS D D +++    G +  H + SGH
Sbjct: 323 DEHRDSVTDACWPSTDFDVFMTCGKDGLVVLHNIDSGH 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,741,661
Number of Sequences: 27780
Number of extensions: 156614
Number of successful extensions: 632
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)