Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0253
(284 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase, p... 30 0.22
At4g29780.1 68417.m04241 expressed protein 29 0.38
At5g54020.1 68418.m06719 expressed protein 29 0.66
At5g12010.1 68418.m01404 expressed protein 28 0.87
At4g22770.1 68417.m03287 DNA-binding family protein contains a A... 28 1.2
At4g14740.2 68417.m02267 expressed protein 28 1.2
At4g14740.1 68417.m02266 expressed protein 28 1.2
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 28 1.2
At1g59850.1 68414.m06741 expressed protein 27 1.5
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 27 2.7
At5g05840.1 68418.m00642 expressed protein contains Pfam profile... 26 3.5
At4g22120.1 68417.m03198 early-responsive to dehydration protein... 26 4.6
At4g02900.1 68417.m00392 early-responsive to dehydration protein... 26 4.6
At2g31230.1 68415.m03814 ethylene-responsive factor, putative si... 26 4.6
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 25 6.1
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 25 6.1
At5g35604.1 68418.m04242 hypothetical protein 25 6.1
At1g40230.1 68414.m04784 hypothetical protein 25 6.1
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 25 8.1
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 25 8.1
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 25 8.1
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 25 8.1
At3g16770.1 68416.m02141 AP2 domain-containing protein RAP2.3 (R... 25 8.1
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 25 8.1
At1g27210.1 68414.m03314 expressed protein 25 8.1
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 25 8.1
At1g05310.1 68414.m00538 pectinesterase family protein contains ... 25 8.1
>At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase,
putative similar to laccase LAC2-4, Liriodendron
tulipifera, EMBL:LTU73106 [GI:1621467]
Length = 577
Score = 30.3 bits (65), Expect = 0.22
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 214 PPRHSARGRPQPPRRSTT-ARSICTRSVSGP-RLLFKCLYGGQAHGPHGVKWSPEPIDSF 41
P H Q P +T A SI S + P + L + Y GQ+HG + K+ PI F
Sbjct: 377 PCNHKNNQTCQGPTNTTMFAASISNISFTMPTKALLQSHYSGQSHGVYSPKFPWSPIVPF 436
Query: 40 YSTTAAPP 17
+ T PP
Sbjct: 437 -NYTGTPP 443
>At4g29780.1 68417.m04241 expressed protein
Length = 540
Score = 29.5 bits (63), Expect = 0.38
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 182 LWAAPRTVAWWQRCAAPPSPQRAF 253
LW RT WW R + P P+ F
Sbjct: 190 LWVKERTTDWWDRVSRPDFPEDEF 213
>At5g54020.1 68418.m06719 expressed protein
Length = 556
Score = 28.7 bits (61), Expect = 0.66
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 284 HFAYFCRSKLKKLSEVKVGRHSAATTPQCA-GPPTAAATQHDRSQYLHPLRLRTSTF 117
HF +FCRSKL KL + + + +C PP Q ++ L LR TF
Sbjct: 90 HFCHFCRSKL-KLKHFRCTICNISVGRECVKDPPPLTIYQPKHHKHSLTLLLRLVTF 145
>At5g12010.1 68418.m01404 expressed protein
Length = 502
Score = 28.3 bits (60), Expect = 0.87
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 182 LWAAPRTVAWWQRCAAPPSPQRAF 253
LW R+ AWW+ C+ P+ F
Sbjct: 152 LWVKDRSRAWWEECSRLDYPEEDF 175
>At4g22770.1 68417.m03287 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 334
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 214 PPRHSARGRPQPPRRSTTARSICTRSVSGPRLLFKCLYGGQAHGPHGVKWSPEPIDSFYS 35
PP A P PP+ S T + SGP + H V SP PI S
Sbjct: 41 PPNSVAPPPPPPPQNSFTPSAAMDGFSSGPIKKRRGRPRKYGHDGAAVTLSPNPISSAAP 100
Query: 34 TTA 26
TT+
Sbjct: 101 TTS 103
>At4g14740.2 68417.m02267 expressed protein
Length = 475
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 272 FCRSKLKKLSEVKVGRHSAATTPQCAGPPTAAATQ 168
FCR+ L+ V S A TP GP TA ATQ
Sbjct: 143 FCRANKNSLNSVNSQFRSTAATP---GPITATATQ 174
>At4g14740.1 68417.m02266 expressed protein
Length = 475
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 272 FCRSKLKKLSEVKVGRHSAATTPQCAGPPTAAATQ 168
FCR+ L+ V S A TP GP TA ATQ
Sbjct: 143 FCRANKNSLNSVNSQFRSTAATP---GPITATATQ 174
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 284 HFAYFCRSKLKKLSEVKVGRHSAATTPQCAGPP 186
H Y S+LKK S K G +A P+ PP
Sbjct: 1067 HQLYLLNSQLKKASVFKTGDDNAPRNPEMHDPP 1099
>At1g59850.1 68414.m06741 expressed protein
Length = 498
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 82 GRELAPHIST*IKVEVRRRSGCRYCERSCCVAAAV 186
G LAPH+S + +RR R+ CVAA+V
Sbjct: 92 GDSLAPHLSKMVSTVLRRLRDPDSSVRAACVAASV 126
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 229 GGTALPPRHSARGRPQPPRRSTTARSICTRSVSGPR 122
GG+A PP H P PP ++ GPR
Sbjct: 258 GGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMGGPR 293
>At5g05840.1 68418.m00642 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620);
expression supported by MPSS
Length = 439
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 262 VS*KSSLR*RWGGTALPPRHSARGRPQPPRR 170
+S S + W T P H++RG P+P RR
Sbjct: 196 ISAGSDAKVAWRQTPWHPSHASRGPPRPLRR 226
>At4g22120.1 68417.m03198 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 771
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 70 KWSPEPIDSFYSTTAAP 20
+W+PEP D F+S A P
Sbjct: 351 EWAPEPRDVFWSNLAIP 367
>At4g02900.1 68417.m00392 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 785
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -2
Query: 109 CLYGGQAHGPHG--VKWSPEPIDSFYSTTAAP 20
C Q H P +W+PEP D F+ A P
Sbjct: 333 CAQTQQCHNPTIWLTEWAPEPRDVFWDNLAIP 364
>At2g31230.1 68415.m03814 ethylene-responsive factor, putative
similar to ethylene response factor 1 GB:AAD03544
GI:4128208 from [Arabidopsis thaliana]
Length = 243
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 220 ALPPRHSARGRPQPPRRSTTARSICTRSVS 131
AL +HS R RP+ +RS+++ S + S S
Sbjct: 168 ALKRKHSLRNRPRGKKRSSSSSSSSSNSSS 197
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 266 RSKLKKLSEVKVGRHSAATTPQCAGPPTAAATQHDRSQYLHPLR 135
+SK+ S +KV + AAT P A P+ + D +++ P+R
Sbjct: 174 KSKMSYASILKVAKE-AATVPVAATQPSYNKSSQDINEWDQPMR 216
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 266 RSKLKKLSEVKVGRHSAATTPQCAGPPTAAATQHDRSQYLHPLR 135
+SK+ S +KV + AAT P A P+ + D +++ P+R
Sbjct: 233 KSKMSYASILKVAKE-AATVPVAATQPSYNKSSQDINEWDQPMR 275
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 211 PRHSARGRPQPPRRSTTARSICTRSVSGP 125
PR +RG P R AR+ C+ +S P
Sbjct: 71 PRRPSRGNSSPRRDKARARTDCSPRLSPP 99
>At1g40230.1 68414.m04784 hypothetical protein
Length = 303
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 260 KLKKLSEVKVGRHSAATTPQCAGPPTAAATQHDRSQYLHPL 138
+L LS +++ HS T P PP + DR ++L L
Sbjct: 106 RLLHLSRLRLPSHSTTTQPLPLAPPPSFFLSLDRFRHLSSL 146
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 229 GGTALPPRHSARGRPQPPRRSTTARSICTRSVSGPR 122
G PP S R R + PRRS + R RS S PR
Sbjct: 104 GRVVEPPPKSRRSRSRSPRRSRSPR----RSRSPPR 135
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 229 GGTALPPRHSARGRPQPPRRSTTARSICTRSVSGPR 122
G PP S R R + PRRS + R RS S PR
Sbjct: 104 GRVVEPPPKSRRSRSRSPRRSRSPR----RSRSPPR 135
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 182 LWAAPRTVAWWQRCAAPPSPQRAFLA 259
L A+P T +W+RC + PS A L+
Sbjct: 99 LVASPITSPYWKRCLSLPSSNSAKLS 124
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/66 (25%), Positives = 23/66 (34%)
Frame = -2
Query: 214 PPRHSARGRPQPPRRSTTARSICTRSVSGPRLLFKCLYGGQAHGPHGVKWSPEPIDSFYS 35
PP P PP CTR P H P ++SP P + +Y
Sbjct: 512 PPPPPVYSSPPPPPSPAPTPVYCTRPPPPP-----------PHSPPPPQFSPPPPEPYYY 560
Query: 34 TTAAPP 17
++ PP
Sbjct: 561 SSPPPP 566
>At3g16770.1 68416.m02141 AP2 domain-containing protein RAP2.3
(RAP2.3) identical to GI:2281631 [Arabidopsis thaliana];
identical to cDNA EBP GI:2190330
Length = 248
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -2
Query: 214 PPRHSARGRPQPPRRSTTARSICTRSVSGPRLLFKCLYGGQAHGPHGVKWSPEP 53
PP S R QPP + S +S P +C+ G + + EP
Sbjct: 147 PPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFGNGDEFQNLSYGFEP 200
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 214 PPRHSARGRPQPPRR 170
PPR+ +R R PPRR
Sbjct: 139 PPRYYSRSRSPPPRR 153
>At1g27210.1 68414.m03314 expressed protein
Length = 625
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = +1
Query: 40 KNCLWVPVTT*HHVGRELAPHIST*IKVEVRRRSGCRYCERSCCVAAAVGGPAH 201
K C+ + + G L PH++ + +RR RS C A AH
Sbjct: 91 KQCVALLSVLSRYHGDSLTPHLAKMVSTVIRRLRDPDSSVRSACAVATADMSAH 144
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = -2
Query: 103 YGGQAHGPHGVKWSPEPIDSFYSTTAAPP 17
YG H +W+P ID F PP
Sbjct: 264 YGRLGHREQKDEWAPRRIDVFQRNNVLPP 292
>At1g05310.1 68414.m00538 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 393
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 109 CLYGGQAHGPHGVKWSPEPIDSFYSTTAAPPLKPE 5
C GG H G W P F STT + PE
Sbjct: 296 CTIGGTGHVWLGRAWRPYSRVVFVSTTMTDVIAPE 330
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,395,059
Number of Sequences: 28952
Number of extensions: 148127
Number of successful extensions: 561
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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