Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0252
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    28   9.0  

>11_01_0692 -
           5700394-5700474,5700546-5702675,5705033-5706169,
           5709679-5709975
          Length = 1214

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 554 IAHILIIRTRVLSVALSESNISREHTTLIRTAHDLIIDHGRYVILD 691
           + H++ +     S + S   + +E  TL+ T HDL+ D  RYV++D
Sbjct: 462 VCHLMGMSFLQYSKSPSIVQVHQEDVTLL-TMHDLVHDLARYVMVD 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,365,442
Number of Sequences: 37544
Number of extensions: 284934
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)