Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0252
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)                  28   9.2  

>SB_17542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 581 RVLSVALSESNISREHTTLIRTAHDLIIDH 670
           ++++  + ++NIS  +T +IRT+H  II H
Sbjct: 30  KMMTAKMLDTNISTINTAVIRTSHSHIISH 59


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -1

Query: 330  IDLLFGNLKILFYIILNSLCENAGILLFNIQHNFIVFIKLFFHFKTASNL 181
            +D+ F  L+++   I+++LC N  +   NI  N + + +  ++  TAS++
Sbjct: 891  LDISFCGLEVVSGDIISALCMNTILKSLNIAGNRLAYFQFSYNQGTASSI 940


>SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 545 KLEIAHILIIRTRVLSVALSESNISREHTTLIRTAH 652
           +L  AH +I  T +L      ++++  HT+L+RT H
Sbjct: 76  RLYYAHAIITHTSLLRTRRYYAHVAITHTSLLRTRH 111


>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
          Length = 332

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 170 KFRKMNRLRKDRGEKIRLFPSRVHFYSIELINRKMHFYSPLASSVRFKRTFLNVRI 3
           K R++N LRK R ++++    R+H     L   K      LA SV++K T L   +
Sbjct: 58  KEREINNLRKTRNDEVKKLKERIHV----LEEEKKRLEEELA-SVKYKLTALESEV 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,129,342
Number of Sequences: 59808
Number of extensions: 376344
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)