Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0252
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 517 NGHSE*GSFKIGNSAHSNNTNASFICGT 600
           NG ++ G+   GN A +NN N    C T
Sbjct: 252 NGANDNGN---GNGASNNNNNGDMFCHT 276


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 600 SATDKTRVRIIRMCAISNFKTSSFRVAILNSE 505
           S  +K    IIRM  IS  KTS  ++   N++
Sbjct: 68  STNEKITRYIIRMFLISQQKTSKLKIYKWNNQ 99


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 600 SATDKTRVRIIRMCAISNFKTSSFRVAILNSE 505
           S  +K    IIRM  IS  KTS  ++   N++
Sbjct: 51  STNEKITRYIIRMFLISQQKTSKLKIYKWNNQ 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,722
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)