Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0251
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = -2

Query: 542 PVSGPGEISRVGQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPAEPL 378
           P+    + S +GQ  PQ P   V F      S L P      KS  S   P  PL
Sbjct: 25  PLDMKPDASTLGQFSPQGPNSPVSFSMGGHGSLLSPSGNTPNKSSTSPYPPNHPL 79


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 641 RYRN*PDKSLHQLRTAMHHH 582
           R RN PD S H LR+    H
Sbjct: 53  RLRNVPDNSFHFLRSLKKVH 72


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 207 YCDVRGEILGSSQENIAKAFAKGVFINQERK 299
           + D+R  ++ S   N+A  F   V  NQ +K
Sbjct: 740 FFDIRKNLIFSLIANVAMYFVISVQFNQNQK 770


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,519
Number of Sequences: 336
Number of extensions: 3991
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)