Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0251
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.74 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.97 
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    28   1.3  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    28   1.7  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   5.2  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   6.9  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   9.1  
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    25   9.1  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   9.1  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 147 YFVGFQN-SEVMINRDNWGHSYCDVRGEIL 233
           Y VG+ N + ++++   WGHS+ +V  E+L
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 575 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 718
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 162 QNSEVMINRDNWGHSYCDVRGEILGSSQENIAKAFAKGVF-INQERKLEVRRRLDT 326
           +N+   +  DNW H+Y   R EI+  S  ++  A  KG++   Q ++     RL T
Sbjct: 425 KNAHKYVLSDNWSHAY---REEIVRQSLHHLTVAKEKGIWSFRQPKRQNEMPRLKT 477


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 589 TTTHRIKKELLICQSFRCPGLVRFPVLVK 503
           T   R+ K  +     RCP ++R+P L+K
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPLIK 403


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 623  DKSLHQLRTAMHHHPPNQERAVNLSILPVSGPGEIS----RVGQIKPQAPLLVV 474
            D +LH     + +H  + E A NLSILP+     +S    +V  + P+ P  +V
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPREPFKLV 1114


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 489 STPGGALPSIPLSFSFATILPPESKIFGFPEAA 391
           ST   ALP  PLSFS     P ++     PE+A
Sbjct: 420 STMPEALPREPLSFSLPEKAPEKATNISIPESA 452


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +3

Query: 264 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 431
           F  G+F+ +  K   +R +  A    L    NM             G  P     WT  G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317

Query: 432 VWLQS*NLKELTEGHHQEW 488
           +W +  +L  L   H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336


>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 431 SMVAKLKLKGIDGRAPPGVEPAA*FDQHGKSHQARTPEGLTD*QLFLD 574
           SM+AK K   ++   P     A  FD+  K   A   EG+ D  + LD
Sbjct: 265 SMMAKAKKNNVEVFLPVDFVTADKFDKDAKVGSATAEEGIPDGWMGLD 312


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 584 HPPNQERAVNLSILPVSGPGEISRVGQIKPQAPLLVVP 471
           HPP    + N S+ P++ P  ++      P  P  ++P
Sbjct: 214 HPPPPSDSANSSVTPIAAPLVVNGKVSGNPPYPAEIIP 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,814
Number of Sequences: 5004
Number of extensions: 66723
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)