Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0251
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1559 + 27727492-27728193                                         30   1.8  
03_06_0189 + 32214702-32215154                                         29   3.1  
07_01_0130 - 963856-965454                                             29   4.1  
02_01_0759 - 5628913-5630870,5631023-5631047                           29   5.4  
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440...    28   7.2  
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988...    28   9.5  

>07_03_1559 + 27727492-27728193
          Length = 233

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = +2

Query: 359 RSADVTTMARRAASGKPKILDSGGSMVAKLK----LKGIDGRAPPGVEPAA*FDQHGKSH 526
           R+A    +A  A S    + D GG  V K+     +K + GR PP        D HG + 
Sbjct: 111 RAAGAPLLAGGAKSPFEYVKDDGGRTVIKVTEEFIVKAVTGRRPPAGGGGEGEDAHGAAA 170

Query: 527 QARTPEGLTD*QLFLDSVGGGAW 595
              TPE     +  + +  G  W
Sbjct: 171 LCSTPELRKHYEQLVGAARGRPW 193


>03_06_0189 + 32214702-32215154
          Length = 150

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 498 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 391
           AA + P  ALP +P   +  T LPP   I   P+AA
Sbjct: 30  AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65


>07_01_0130 - 963856-965454
          Length = 532

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 611 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISRVGQIK 498
           H +   +   PPN     NL +LP+ GP ++ +   +K
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGKSTLVK 232


>02_01_0759 - 5628913-5630870,5631023-5631047
          Length = 660

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 550 QSFRCPGLVRFPVLVKLSRRLHSWWCPSVNSFKFQLCNH 434
           Q+ RC  +   P +  L+    + +CPS+    F+ C H
Sbjct: 364 QNLRCMSVTSCPGVTNLALAAIAKFCPSLRQLSFRKCGH 402


>11_01_0559 -
           4406815-4406922,4408954-4409042,4409177-4409270,
           4409344-4409481,4409570-4409727,4409826-4409916,
           4410003-4411637
          Length = 770

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 245 REHRESICQRCFHQSRTKVRGSKAIRYRPSSNRKYVI 355
           +  R ++  RC   SR  VRG  A R  P+  R Y +
Sbjct: 181 KRQRNAVLTRCRSDSRLAVRGGGAARKPPTFRRVYSV 217


>04_04_0260 +
           23996775-23996865,23997031-23997566,23998407-23998892,
           23998989-23999152,23999220-23999281,23999753-23999907,
           24000625-24000738,24001701-24002233,24002512-24002609,
           24003108-24003398,24003764-24003830,24003905-24003983
          Length = 891

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 210 CDVRGEILGSSQENIAKAFAKGVFINQERKLE 305
           C++ G+I+  S+E+I K      F+N+  KLE
Sbjct: 719 CNITGDIINKSEEHIWKHINGKRFLNKLEKLE 750


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,545,948
Number of Sequences: 37544
Number of extensions: 515046
Number of successful extensions: 1346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)