Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0251
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -2

Query: 260 FRDVLLRRSKNFTSNVAIRMPPVIPINH-----YLGVLKTN 153
           ++D++L   K     +A+  PPV+P NH     YL V++ N
Sbjct: 342 WKDIMLLNEKT----LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -2

Query: 260 FRDVLLRRSKNFTSNVAIRMPPVIPINH-----YLGVLKTN 153
           ++D++L   K     +A+  PPV+P NH     YL V++ N
Sbjct: 342 WKDIMLLNEKT----LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -2

Query: 260 FRDVLLRRSKNFTSNVAIRMPPVIPINH-----YLGVLKTN 153
           ++D++L   K     +A+  PPV+P NH     YL V++ N
Sbjct: 342 WKDIMLLNEKT----LAVPAPPVLPENHLKNAKYLDVIERN 378


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 201 HSYCDVRGEILGSSQENIAKAFAK 272
           H Y  V G + G  Q N+A    K
Sbjct: 618 HGYASVVGPVKGIYQHNVASGLTK 641


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 452 LKGIDGRAPPGVEPAA*FDQHGKSHQARTPEGL 550
           +  ++ R    ++     D++GK     TPEGL
Sbjct: 329 INALEMRLMDAIDSGYLIDEYGKKIDIYTPEGL 361


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 452 LKGIDGRAPPGVEPAA*FDQHGKSHQARTPEGL 550
           +  ++ R    ++     D++GK     TPEGL
Sbjct: 329 INALEMRLMDAIDSGYLIDEYGKKIDIYTPEGL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,428
Number of Sequences: 438
Number of extensions: 5182
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)