Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0251
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14180.1 68417.m02189 expressed protein ; expression supporte...    29   3.4  
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa...    28   7.9  
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc...    28   7.9  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   7.9  

>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = -2

Query: 299 LSFLIDENTFGKCFRDVLLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSII 123
           +  +++EN     F  + L    +F   + I  P VI + HY+G +  +  + ++  +I
Sbjct: 338 IQVMVEENVADYIFEILRLSAEHSFRKRLVIGFPSVIRVLHYVGEVPCHPFQIQTLKLI 396


>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|P27048 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Mus musculus}
          Length = 254

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 581 PPNQERAVNLSILPVSGPGEISRVGQIKPQAPLL 480
           PP + RA + S+  V+GPG     G+  P  PL+
Sbjct: 90  PPEESRAKSGSVTAVAGPGIGRAAGRGVPTGPLV 123


>At2g26470.1 68415.m03176 expressed protein contains PF02586:
           Uncharacterized ACR, COG2135; weak similarity to NF-M
           protein (GI:205688) [Rattus norvegicus]
          Length = 487

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
 Frame = -3

Query: 373 NVGGSLDDIFTVRTRAVSNRLRTSNFRS*LMKTPLANAFAMFS-CDDP---RISPLTSQY 206
           N GG     FT+ T A S+ L+  + R   M   L +  ++ +  DDP   ++ PL S Y
Sbjct: 149 NSGGETLYTFTILTTASSSALQWLHDR---MPVILGDKDSIDTWLDDPSTTKLQPLLSPY 205

Query: 205 ECPQLSLLIITSEF*KPTK*NRDHILLFHARNIQAAFLARF 83
           E   L    +TS   KPT    + I     +  Q + +++F
Sbjct: 206 EKSDLVWYPVTSAIGKPTFDGPECIQQIPLKTSQNSLISKF 246


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 445 LCNHTPPGVQNLWFPGSCPP 386
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,287,546
Number of Sequences: 28952
Number of extensions: 376924
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)