Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0250
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.74 
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   1.7  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   6.9  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.9  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.1  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 536 YCVGFQN-SEVMINRDNWGHSYCDVRGEIL 622
           Y VG+ N + ++++   WGHS+ +V  E+L
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 89  RANYPLPAREVVTKNNDT 142
           +AN P+P  EVVT+NN T
Sbjct: 199 KANIPVPTSEVVTENNVT 216


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 124 HYLPCREWVICAPA 83
           HY+PC+ W++  P+
Sbjct: 455 HYIPCQSWLVWYPS 468


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 556 VLKTNTIEPRSYSIIPARNIQAAFLARFEHSNLFKVKLSAHLD 428
           +LKT  ++  S  I P  NI A  ++  EH  +F +     +D
Sbjct: 26  LLKTLGLKVTSIKIDPYMNIDAGTMSPLEHGEVFVLNDGGEVD 68


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 176 YSFRLRGLVRVPYRYFSSLPPVPGVGNL 93
           YS RLR  ++  Y+Y   + P PG+ ++
Sbjct: 271 YSHRLRDSLKEVYQYRRIISPPPGLSSM 298


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 520 NMISVLLCWFSELRGND 570
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,562
Number of Sequences: 5004
Number of extensions: 47876
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)